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3DM1
Biol. Unit 4
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Asym.Unit (50 KB)
Biol.Unit 1 (12 KB)
Biol.Unit 2 (13 KB)
Biol.Unit 3 (12 KB)
Biol.Unit 4 (12 KB)
Biol.Unit 5 (44 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN CHROMOBOX HOMOLOG 3 (CBX3) WITH PEPTIDE
Authors
:
M. F. Amaya, M. Ravichandran, P. Loppnau, I. Kozieradzki, A. M. Edwards C. H. Arrowsmith, J. Weigelt, C. Bountra, A. Bochkarev, J. Min, H. Ouya Structural Genomics Consortium (Sgc)
Date
:
30 Jun 08 (Deposition) - 19 Aug 08 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: A,B,C,D,E,F,G,H (1x)
Keywords
:
Chromobox Homolog 3, Structural Genomics, Structural Genomics Consortium, Sgc, Chromatin Regulator, Nucleus, Phosphoprotein, Repressor, Transcription, Transcription Regulation
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Ruan, H. Ouyang, M. F. Amaya, M. Ravichandran, P. Loppnau, J. Min, J. Zang
Structural Basis Of The Chromodomain Of Cbx3 Bound To Methylated Peptides From Histone H1 And G9A.
Plos One V. 7 35376 2012
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Hetero Components
(1, 1)
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All Hetero Components
1a: N-TRIMETHYLLYSINE (M3La)
1b: N-TRIMETHYLLYSINE (M3Lb)
1c: N-TRIMETHYLLYSINE (M3Lc)
1d: N-TRIMETHYLLYSINE (M3Ld)
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No.
Name
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Type
Full Name
1
M3L
1
Mod. Amino Acid
N-TRIMETHYLLYSINE
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PROSITE Patterns/Profiles
(2, 2)
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1: CHROMO_2 (G:30-81|-)
2: CHROMO_1 (G:47-67)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHROMO_2
PS50013
Chromo and chromo shadow domain profile.
CBX3_HUMAN
30-88
121-179
1
-
-
-
G:30-81
-
2
CHROMO_1
PS00598
Chromo domain signature.
CBX3_HUMAN
47-67
1
-
-
-
G:47-67
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CATH Domains
(1, 4)
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1a: CATH_3dm1E00 (E:29-81)
1b: CATH_3dm1G00 (G:29-81)
1c: CATH_3dm1A00 (A:29-80)
1d: CATH_3dm1C00 (C:29-80)
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.40, no name defined]
(161)
Homo sapiens. Organism_taxid: 9606.
(1)
1a
3dm1E00
E:29-81
1b
3dm1G00
G:29-81
1c
3dm1A00
A:29-80
1d
3dm1C00
C:29-80
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