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3DLU
Asym. Unit
Info
Asym.Unit (72 KB)
Biol.Unit 1 (67 KB)
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(1)
Title
:
STRUCTURES OF SRP54 AND SRP19, THE TWO PROTEINS ASSEMBLING THE RIBONUCLEIC CORE OF THE SIGNAL RECOGNITION PARTICLE FROM THE ARCHAEON PYROCOCCUS FURIOSUS.
Authors
:
P. F. Egea, J. Napetschnig, P. Walter, R. M. Stroud
Date
:
29 Jun 08 (Deposition) - 04 Nov 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Protein-Rna, Signal Recognition Particle, Cytoplasm, Ribonucleoprotein, Rna-Binding, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. F. Egea, J. Napetschnig, P. Walter, R. M. Stroud
Structures Of Srp54 And Srp19, The Two Proteins That Organize The Ribonucleic Core Of The Signal Recognition Particle From Pyrococcus Furiosus.
Plos One V. 3 E3528 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 40)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1aa: BROMIDE ION (BRaa)
1ab: BROMIDE ION (BRab)
1ac: BROMIDE ION (BRac)
1ad: BROMIDE ION (BRad)
1ae: BROMIDE ION (BRae)
1af: BROMIDE ION (BRaf)
1ag: BROMIDE ION (BRag)
1ah: BROMIDE ION (BRah)
1ai: BROMIDE ION (BRai)
1aj: BROMIDE ION (BRaj)
1ak: BROMIDE ION (BRak)
1al: BROMIDE ION (BRal)
1am: BROMIDE ION (BRam)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
1i: BROMIDE ION (BRi)
1j: BROMIDE ION (BRj)
1k: BROMIDE ION (BRk)
1l: BROMIDE ION (BRl)
1m: BROMIDE ION (BRm)
1n: BROMIDE ION (BRn)
1o: BROMIDE ION (BRo)
1p: BROMIDE ION (BRp)
1q: BROMIDE ION (BRq)
1r: BROMIDE ION (BRr)
1s: BROMIDE ION (BRs)
1t: BROMIDE ION (BRt)
1u: BROMIDE ION (BRu)
1v: BROMIDE ION (BRv)
1w: BROMIDE ION (BRw)
1x: BROMIDE ION (BRx)
1y: BROMIDE ION (BRy)
1z: BROMIDE ION (BRz)
2a: MALONATE ION (MLIa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
39
Ligand/Ion
BROMIDE ION
2
MLI
1
Ligand/Ion
MALONATE ION
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC3 (SOFTWARE)
12: BC4 (SOFTWARE)
13: BC5 (SOFTWARE)
14: BC6 (SOFTWARE)
15: BC7 (SOFTWARE)
16: BC8 (SOFTWARE)
17: BC9 (SOFTWARE)
18: CC1 (SOFTWARE)
19: CC2 (SOFTWARE)
20: CC3 (SOFTWARE)
21: CC4 (SOFTWARE)
22: CC5 (SOFTWARE)
23: CC6 (SOFTWARE)
24: CC7 (SOFTWARE)
25: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY C:80 , LYS C:83
BINDING SITE FOR RESIDUE BR C 107
02
AC2
SOFTWARE
TRP A:7
BINDING SITE FOR RESIDUE BR A 107
03
AC3
SOFTWARE
TRP D:7
BINDING SITE FOR RESIDUE BR D 107
04
AC4
SOFTWARE
TRP C:7
BINDING SITE FOR RESIDUE BR C 108
05
AC5
SOFTWARE
GLU A:30
BINDING SITE FOR RESIDUE BR A 108
06
AC6
SOFTWARE
ARG C:3 , PHE C:4 , GLY D:20
BINDING SITE FOR RESIDUE BR C 109
07
AC7
SOFTWARE
PHE C:4 , GLU D:10
BINDING SITE FOR RESIDUE BR C 112
08
AC8
SOFTWARE
ARG A:25 , SER A:26 , ALA A:28 , ARG A:93
BINDING SITE FOR RESIDUE BR A 110
09
AC9
SOFTWARE
TRP A:7 , GLU A:10 , PHE B:4
BINDING SITE FOR RESIDUE BR B 107
10
BC1
SOFTWARE
ARG D:17 , ARG D:21
BINDING SITE FOR RESIDUE BR D 111
11
BC3
SOFTWARE
GLY A:20 , ILE A:22 , ARG B:3 , PHE B:4
BINDING SITE FOR RESIDUE BR A 113
12
BC4
SOFTWARE
LYS A:45 , SER B:77 , PRO B:78
BINDING SITE FOR RESIDUE BR A 115
13
BC5
SOFTWARE
LEU C:87 , GLN C:90
BINDING SITE FOR RESIDUE BR C 113
14
BC6
SOFTWARE
ARG A:17
BINDING SITE FOR RESIDUE BR A 117
15
BC7
SOFTWARE
SER A:77 , PRO A:78
BINDING SITE FOR RESIDUE BR A 118
16
BC8
SOFTWARE
SER A:9
BINDING SITE FOR RESIDUE BR A 119
17
BC9
SOFTWARE
SER A:9 , ASP A:12
BINDING SITE FOR RESIDUE BR A 120
18
CC1
SOFTWARE
SER A:16 , ARG A:17 , LYS A:18
BINDING SITE FOR RESIDUE BR A 121
19
CC2
SOFTWARE
SER C:82 , LYS C:83 , LYS C:86
BINDING SITE FOR RESIDUE BR C 114
20
CC3
SOFTWARE
ARG A:25 , SER A:26
BINDING SITE FOR RESIDUE BR A 122
21
CC4
SOFTWARE
SER B:26 , ILE D:27 , GLN D:90
BINDING SITE FOR RESIDUE BR D 112
22
CC5
SOFTWARE
ARG A:50 , TRP B:7
BINDING SITE FOR RESIDUE BR B 108
23
CC6
SOFTWARE
SER A:26
BINDING SITE FOR RESIDUE BR A 124
24
CC7
SOFTWARE
ARG A:96
BINDING SITE FOR RESIDUE BR A 125
25
CC9
SOFTWARE
ARG C:93 , ARG C:96 , ARG C:97 , SER D:13 , ARG D:14 , ARG D:25
BINDING SITE FOR RESIDUE MLI C 1001
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3dlua_ (A:)
1b: SCOP_d3dlub_ (B:)
1c: SCOP_d3dluc_ (C:)
1d: SCOP_d3dlud_ (D:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SRP19
(11)
Superfamily
:
SRP19
(11)
Family
:
automated matches
(2)
Protein domain
:
automated matches
(2)
Pyrococcus furiosus [TaxId: 2261]
(2)
1a
d3dlua_
A:
1b
d3dlub_
B:
1c
d3dluc_
C:
1d
d3dlud_
D:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (72 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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