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3DKH
Asym. Unit
Info
Asym.Unit (210 KB)
Biol.Unit 1 (200 KB)
Biol.Unit 2 (201 KB)
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(1)
Title
:
L559A MUTANT OF MELANOCARPUS ALBOMYCES LACCASE
Authors
:
N. Hakulinen, J. Rouvinen
Date
:
25 Jun 08 (Deposition) - 07 Jul 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Laccase, Multicopper Oxidase, C-Terminal Mutant, Ascomycete, Glycoprotein, Lignin Degradation, Metal-Binding, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Andberg, N. Hakulinen, S. Auer, M. Saloheimo, A. Koivula, J. Rouvinen, K. Kruus
Essential Role Of The C-Terminus In Melanocarpus Albomyces Laccase For Enzyme Production, Catalytic Properties And Structure
Febs J. V. 276 6285 2009
[
close entry info
]
Hetero Components
(8, 45)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
2a: CHLORIDE ION (CLa)
3a: COPPER (II) ION (CUa)
3b: COPPER (II) ION (CUb)
3c: COPPER (II) ION (CUc)
3d: COPPER (II) ION (CUd)
3e: COPPER (II) ION (CUe)
3f: COPPER (II) ION (CUf)
3g: COPPER (II) ION (CUg)
3h: COPPER (II) ION (CUh)
4a: GLYCEROL (GOLa)
5a: ALPHA-D-MANNOSE (MANa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6l: N-ACETYL-D-GLUCOSAMINE (NAGl)
6m: N-ACETYL-D-GLUCOSAMINE (NAGm)
6n: N-ACETYL-D-GLUCOSAMINE (NAGn)
6o: N-ACETYL-D-GLUCOSAMINE (NAGo)
6p: N-ACETYL-D-GLUCOSAMINE (NAGp)
6q: N-ACETYL-D-GLUCOSAMINE (NAGq)
6r: N-ACETYL-D-GLUCOSAMINE (NAGr)
6s: N-ACETYL-D-GLUCOSAMINE (NAGs)
6t: N-ACETYL-D-GLUCOSAMINE (NAGt)
6u: N-ACETYL-D-GLUCOSAMINE (NAGu)
6v: N-ACETYL-D-GLUCOSAMINE (NAGv)
6w: N-ACETYL-D-GLUCOSAMINE (NAGw)
6x: N-ACETYL-D-GLUCOSAMINE (NAGx)
7a: OXYGEN MOLECULE (OXYa)
7b: OXYGEN MOLECULE (OXYb)
8a: SULFATE ION (SO4a)
8b: SULFATE ION (SO4b)
8c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
5
Ligand/Ion
BETA-D-MANNOSE
2
CL
1
Ligand/Ion
CHLORIDE ION
3
CU
8
Ligand/Ion
COPPER (II) ION
4
GOL
1
Ligand/Ion
GLYCEROL
5
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
24
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
OXY
2
Ligand/Ion
OXYGEN MOLECULE
8
SO4
3
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(45, 45)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:39 , THR A:41 , ASN A:84 , GLU B:78 , ARG B:126
BINDING SITE FOR RESIDUE NAG A 700
02
AC2
SOFTWARE
LYS A:56 , THR A:87 , ASN A:88 , ASP A:181 , ASN A:550 , TYR A:552 , PRO A:553 , NAG A:711 , HOH A:964 , HOH A:979
BINDING SITE FOR RESIDUE NAG A 710
03
AC3
SOFTWARE
GLU A:55 , ALA A:179 , ASP A:181 , ASP A:182 , NAG A:710 , BMA A:712 , HOH A:1068 , HOH A:1140
BINDING SITE FOR RESIDUE NAG A 711
04
AC4
SOFTWARE
NAG A:711 , MAN A:714 , HOH A:1068 , HOH A:1217
BINDING SITE FOR RESIDUE BMA A 712
05
AC5
SOFTWARE
ARG A:178 , BMA A:712 , HOH A:1140
BINDING SITE FOR RESIDUE MAN A 714
06
AC6
SOFTWARE
ASN A:216 , THR A:218 , HIS A:311 , GLY A:317 , GLY A:318 , NAG A:721 , HOH A:1075 , HOH A:1205
BINDING SITE FOR RESIDUE NAG A 720
07
AC7
SOFTWARE
HIS A:311 , GLY A:314 , GLY A:317 , NAG A:720 , HOH A:1232
BINDING SITE FOR RESIDUE NAG A 721
08
AC8
SOFTWARE
TRP A:287 , ASN A:289 , HIS A:305 , ALA A:307 , GLU A:323 , THR A:325 , PRO A:326 , NAG A:731 , HOH A:904 , HOH A:1079
BINDING SITE FOR RESIDUE NAG A 730
09
AC9
SOFTWARE
TYR A:214 , TRP A:287 , HIS A:305 , GLU A:323 , NAG A:730 , BMA A:732 , HOH A:1206
BINDING SITE FOR RESIDUE NAG A 731
10
BC1
SOFTWARE
NAG A:731 , HOH A:995
BINDING SITE FOR RESIDUE BMA A 732
11
BC2
SOFTWARE
PRO A:355 , ASP A:356 , ASN A:376 , VAL A:406 , NAG A:741
BINDING SITE FOR RESIDUE NAG A 740
12
BC3
SOFTWARE
ASP A:356 , NAG A:740 , HOH A:1200 , HOH A:1234
BINDING SITE FOR RESIDUE NAG A 741
13
BC4
SOFTWARE
LYS A:386 , TYR A:391 , ASN A:396 , HOH A:1156 , GLN B:530 , GLU B:533
BINDING SITE FOR RESIDUE NAG A 750
14
BC5
SOFTWARE
LEU A:167 , ASN A:201 , VAL A:217 , NAG A:761
BINDING SITE FOR RESIDUE NAG A 760
15
BC6
SOFTWARE
NAG A:760 , HOH A:1056
BINDING SITE FOR RESIDUE NAG A 761
16
BC7
SOFTWARE
GLU A:78 , ARG A:126 , ASN B:39 , THR B:41 , ASN B:84 , HOH B:992
BINDING SITE FOR RESIDUE NAG B 700
17
BC8
SOFTWARE
LYS B:56 , THR B:87 , ASN B:88 , ASP B:181 , ASN B:550 , TYR B:552 , PRO B:553 , NAG B:711 , HOH B:918 , HOH B:1119 , HOH B:1141
BINDING SITE FOR RESIDUE NAG B 710
18
BC9
SOFTWARE
GLU B:55 , ALA B:179 , ASP B:181 , ASP B:182 , NAG B:710 , BMA B:712 , HOH B:1065 , HOH B:1141
BINDING SITE FOR RESIDUE NAG B 711
19
CC1
SOFTWARE
ASP B:182 , NAG B:711 , HOH B:1163
BINDING SITE FOR RESIDUE BMA B 712
20
CC2
SOFTWARE
ASN B:216 , THR B:218 , ILE B:309 , HIS B:311 , NAG B:721 , HOH B:1093
BINDING SITE FOR RESIDUE NAG B 720
21
CC3
SOFTWARE
HIS B:311 , GLY B:314 , NAG B:720 , BMA B:722
BINDING SITE FOR RESIDUE NAG B 721
22
CC4
SOFTWARE
NAG B:721
BINDING SITE FOR RESIDUE BMA B 722
23
CC5
SOFTWARE
TRP B:287 , ASN B:289 , HIS B:305 , ALA B:307 , GLU B:323 , NAG B:731 , HOH B:959
BINDING SITE FOR RESIDUE NAG B 730
24
CC6
SOFTWARE
TRP B:287 , HIS B:305 , GLU B:323 , NAG B:730 , BMA B:732 , HOH B:1010
BINDING SITE FOR RESIDUE NAG B 731
25
CC7
SOFTWARE
NAG B:731
BINDING SITE FOR RESIDUE BMA B 732
26
CC8
SOFTWARE
PRO B:355 , ASP B:356 , ASN B:376 , VAL B:406 , NAG B:741 , HOH B:1017
BINDING SITE FOR RESIDUE NAG B 740
27
CC9
SOFTWARE
NAG B:740
BINDING SITE FOR RESIDUE NAG B 741
28
DC1
SOFTWARE
ASP A:379 , ASN A:381 , LYS B:386 , TYR B:391 , ASN B:396
BINDING SITE FOR RESIDUE NAG B 750
29
DC2
SOFTWARE
LEU B:167 , PHE B:170 , ASN B:201 , VAL B:217 , HOH B:943 , HOH B:1001 , HOH B:1139
BINDING SITE FOR RESIDUE NAG B 760
30
DC3
SOFTWARE
ARG A:281 , ASN B:244 , ARG B:281 , ALA B:282 , TYR B:286 , HOH B:912 , HOH B:1050
BINDING SITE FOR RESIDUE NAG B 770
31
DC4
SOFTWARE
HIS A:431 , CYS A:503 , HIS A:508
BINDING SITE FOR RESIDUE CU A 601
32
DC5
SOFTWARE
HIS A:140 , HIS A:436 , HIS A:502 , OXY A:900
BINDING SITE FOR RESIDUE CU A 602
33
DC6
SOFTWARE
HIS A:95 , TRP A:136 , HIS A:138 , HIS A:504 , OXY A:900
BINDING SITE FOR RESIDUE CU A 603
34
DC7
SOFTWARE
HIS A:93 , HIS A:434 , HIS A:436 , CL A:610 , OXY A:900
BINDING SITE FOR RESIDUE CU A 604
35
DC8
SOFTWARE
HIS A:93 , TRP A:94 , HIS A:95 , GLY A:96 , HIS A:434 , CU A:604 , HOH A:1022
BINDING SITE FOR RESIDUE CL A 610
36
DC9
SOFTWARE
HIS B:431 , CYS B:503 , HIS B:508
BINDING SITE FOR RESIDUE CU B 601
37
EC1
SOFTWARE
HIS B:140 , HIS B:436 , HIS B:502 , OXY B:901
BINDING SITE FOR RESIDUE CU B 602
38
EC2
SOFTWARE
HIS B:95 , TRP B:136 , HIS B:138 , HIS B:504 , OXY B:901
BINDING SITE FOR RESIDUE CU B 603
39
EC3
SOFTWARE
HIS B:93 , HIS B:434 , HIS B:436 , OXY B:901
BINDING SITE FOR RESIDUE CU B 604
40
EC4
SOFTWARE
ARG A:492 , HOH A:1048 , HOH A:1163 , ARG B:128 , ARG B:130 , HOH B:1175
BINDING SITE FOR RESIDUE SO4 A 800
41
EC5
SOFTWARE
ARG A:128 , ARG A:130 , ARG B:492
BINDING SITE FOR RESIDUE SO4 B 801
42
EC6
SOFTWARE
ARG A:520 , ARG A:527 , HOH A:1099 , ARG B:520 , ARG B:527
BINDING SITE FOR RESIDUE SO4 A 802
43
EC7
SOFTWARE
HIS A:93 , HIS A:138 , HIS A:140 , HIS A:434 , HIS A:436 , HIS A:502 , HIS A:504 , CU A:602 , CU A:603 , CU A:604
BINDING SITE FOR RESIDUE OXY A 900
44
EC8
SOFTWARE
HIS B:93 , HIS B:138 , HIS B:140 , HIS B:434 , HIS B:436 , HIS B:502 , HIS B:504 , CU B:602 , CU B:603 , CU B:604 , HOH B:1121
BINDING SITE FOR RESIDUE OXY B 901
45
EC9
SOFTWARE
PHE A:427 , PHE B:427 , HOH B:1219
BINDING SITE FOR RESIDUE GOL B 810
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: MULTICOPPER_OXIDASE1 (A:497-517,B:497-517)
2: MULTICOPPER_OXIDASE2 (A:502-513,B:502-513)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTICOPPER_OXIDASE1
PS00079
Multicopper oxidases signature 1.
LAC1_MELAO
547-567
2
A:497-517
B:497-517
2
MULTICOPPER_OXIDASE2
PS00080
Multicopper oxidases signature 2.
LAC1_MELAO
552-563
2
A:502-513
B:502-513
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3dkhA01 (A:2-158)
1b: CATH_3dkhB01 (B:2-158)
1c: CATH_3dkhA02 (A:159-342)
1d: CATH_3dkhB02 (B:159-342)
1e: CATH_3dkhA03 (A:343-559)
1f: CATH_3dkhB03 (B:343-559)
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Classes
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Melanocarpus albomyces. Organism_taxid: 204285. Strain: vtt d-96490.
(7)
1a
3dkhA01
A:2-158
1b
3dkhB01
B:2-158
1c
3dkhA02
A:159-342
1d
3dkhB02
B:159-342
1e
3dkhA03
A:343-559
1f
3dkhB03
B:343-559
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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