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3DJJ
Biol. Unit 1
Info
Asym.Unit (208 KB)
Biol.Unit 1 (402 KB)
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(1)
Title
:
CATALYTIC CYCLE OF HUMAN GLUTATHIONE REDUCTASE NEAR 1 A RESOLUTION
Authors
:
D. S. Berkholz, H. R. Faber, S. N. Savvides, P. A. Karplus
Date
:
23 Jun 08 (Deposition) - 05 Aug 08 (Release) - 25 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Flavoenzyme, Glutathione, Nicotinamide, Alternative Initiation, Fad, Flavoprotein, Mitochondrion, Nadp, Oxidoreductase, Phosphoprotein, Redox-Active Center, Transit Peptide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. S. Berkholz, H. R. Faber, S. N. Savvides, P. A. Karplus
Catalytic Cycle Of Human Glutathione Reductase Near 1 A Resolution.
J. Mol. Biol. V. 382 371 2008
[
close entry info
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Hetero Components
(5, 38)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
4d: PHOSPHATE ION (PO4d)
4e: PHOSPHATE ION (PO4e)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
GOL
16
Ligand/Ion
GLYCEROL
3
NDP
2
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
4
PO4
10
Ligand/Ion
PHOSPHATE ION
5
SO4
8
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:37 , ARG A:347 , HOH A:1022 , HOH A:1158 , HOH A:1190 , HOH A:1191 , HOH A:1287 , HOH A:1434 , HOH A:2795
BINDING SITE FOR RESIDUE PO4 A 481
02
AC2
SOFTWARE
ARG A:218 , HIS A:219 , THR A:257 , LEU A:258 , SER A:259 , HOH A:1321 , HOH A:1360 , HOH A:1407 , HOH A:1640 , HOH A:1767
BINDING SITE FOR RESIDUE PO4 A 482
03
AC3
SOFTWARE
ARG A:38 , ARG A:347 , HOH A:1235 , HOH A:1260 , HOH A:1344 , HOH A:1433 , HOH A:1574 , HOH A:2378
BINDING SITE FOR RESIDUE PO4 A 485
04
AC4
SOFTWARE
THR A:176 , ASP A:178 , GLY A:179 , HOH A:1406 , HOH A:1622 , HOH A:1668 , HOH A:1736 , HOH A:3186
BINDING SITE FOR RESIDUE PO4 A 486
05
AC5
SOFTWARE
LYS A:53 , LEU A:54 , ASN A:111 , GLN A:115 , ARG A:127 , HOH A:1301 , HOH A:1506 , HOH A:1611 , HOH A:3605
BINDING SITE FOR RESIDUE PO4 A 487
06
AC6
SOFTWARE
LYS A:120 , HOH A:1118
BINDING SITE FOR RESIDUE SO4 A 3584
07
AC7
SOFTWARE
HOH A:1258 , HOH A:3507 , HOH A:3788
BINDING SITE FOR RESIDUE SO4 A 3585
08
AC8
SOFTWARE
THR A:404 , THR A:415 , HOH A:1595 , HOH A:1779
BINDING SITE FOR RESIDUE SO4 A 3586
09
AC9
SOFTWARE
ASP A:385 , HOH A:3760
BINDING SITE FOR RESIDUE SO4 A 3587
10
BC1
SOFTWARE
GLY A:27 , GLY A:29 , SER A:30 , GLY A:31 , GLU A:50 , SER A:51 , GLY A:56 , THR A:57 , CYS A:58 , GLY A:62 , CYS A:63 , LYS A:66 , GLY A:128 , HIS A:129 , ALA A:130 , ALA A:155 , THR A:156 , GLY A:157 , ARG A:291 , ASN A:294 , LEU A:298 , GLY A:330 , ASP A:331 , LEU A:337 , LEU A:338 , THR A:339 , PRO A:340 , PHE A:372 , HIS A:467 , PRO A:468 , HOH A:1001 , HOH A:1002 , HOH A:1007 , HOH A:1024 , HOH A:1063 , HOH A:1084 , HOH A:1269 , HOH A:1425
BINDING SITE FOR RESIDUE FAD A 479
11
BC2
SOFTWARE
ALA A:195 , GLY A:196 , TYR A:197 , ILE A:198 , GLU A:201 , ARG A:218 , ARG A:224 , ILE A:289 , GLY A:290 , ARG A:291 , LEU A:337 , LEU A:338 , HOH A:1023 , HOH A:1027 , HOH A:1034 , HOH A:1066 , HOH A:1097 , HOH A:1113 , HOH A:1119 , HOH A:1243 , HOH A:1257 , HOH A:1300 , HOH A:1566 , HOH A:1568 , HOH A:1580 , HOH A:1614 , HOH A:1674 , HOH A:2125 , HOH A:2505 , HOH A:2513 , HOH A:3177 , HOH A:3201
BINDING SITE FOR RESIDUE NDP A 480
12
BC3
SOFTWARE
TYR A:197 , ALA A:336 , HOH A:1105 , HOH A:1219 , HOH A:1300 , HOH A:1382 , HOH A:1538
BINDING SITE FOR RESIDUE GOL A 601
13
BC4
SOFTWARE
SER A:228 , MET A:229 , LYS A:420 , HOH A:1298 , HOH A:1533 , HOH A:1756 , HOH A:1828 , HOH A:3521
BINDING SITE FOR RESIDUE GOL A 602
14
BC5
SOFTWARE
LYS A:324 , GLY A:325 , TYR A:327 , ARG A:352 , HOH A:1069 , HOH A:1203 , HOH A:1285 , HOH A:1384 , HOH A:1445
BINDING SITE FOR RESIDUE GOL A 603
15
BC6
SOFTWARE
TYR A:364 , ASN A:365 , ASN A:366 , ILE A:367 , GLY A:381 , HOH A:1538 , HOH A:1695 , HOH A:3008
BINDING SITE FOR RESIDUE GOL A 604
16
BC7
SOFTWARE
GLU A:101 , LYS A:102 , ALA A:105 , HIS A:122 , HOH A:1068 , HOH A:1152 , HOH A:1798
BINDING SITE FOR RESIDUE GOL A 605
17
BC8
SOFTWARE
MET A:265 , THR A:267 , THR A:277 , ASP A:309 , HOH A:1102 , HOH A:1383 , HOH A:1423 , HOH A:1571 , HOH A:2683
BINDING SITE FOR RESIDUE GOL A 606
18
BC9
SOFTWARE
ASN A:111 , ALA A:112 , GLN A:115 , GLU A:355 , HOH A:1316 , HOH A:1506 , HOH A:9004
BINDING SITE FOR RESIDUE GOL A 607
19
CC1
SOFTWARE
SER A:225 , PHE A:226 , THR A:379 , HOH A:1041 , HOH A:1108 , HOH A:1159 , HOH A:1760 , HOH A:2763 , HOH A:3005 , HOH A:3008 , HOH A:3134
BINDING SITE FOR RESIDUE GOL A 608
[
close Site info
]
SAPs(SNPs)/Variants
(6, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_019079 (R109C, chain A, )
2: VAR_051775 (G188R, chain A, )
3: VAR_019080 (G188S, chain A, )
4: VAR_019081 (I217V, chain A, )
5: VAR_019082 (E253D, chain A, )
6: VAR_014554 (P270H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019079
R
153
C
GSHR_HUMAN
Polymorphism
8190955
A
R
109
C
2
UniProt
VAR_051775
G
232
R
GSHR_HUMAN
Polymorphism
8190976
A
G
188
R
3
UniProt
VAR_019080
G
232
S
GSHR_HUMAN
Polymorphism
8190976
A
G
188
S
4
UniProt
VAR_019081
I
261
V
GSHR_HUMAN
Polymorphism
8190997
A
I
217
V
5
UniProt
VAR_019082
E
297
D
GSHR_HUMAN
Polymorphism
8191004
A
E
253
D
6
UniProt
VAR_014554
P
314
H
GSHR_HUMAN
Polymorphism
2020916
A
P
270
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PYRIDINE_REDOX_1 (A:55-65)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRIDINE_REDOX_1
PS00076
Pyridine nucleotide-disulphide oxidoreductases class-I active site.
GSHR_HUMAN
99-109
2
A:55-65
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d3djja3 (A:364-478)
2a: SCOP_d3djja1 (A:17-165,A:291-363)
2b: SCOP_d3djja2 (A:166-290)
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(
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(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CO dehydrogenase flavoprotein C-domain-like
(111)
Superfamily
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Family
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Protein domain
:
Glutathione reductase
(27)
Human (Homo sapiens) [TaxId: 9606]
(22)
1a
d3djja3
A:364-478
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD/NAD-linked reductases, N-terminal and central domains
(92)
Protein domain
:
Glutathione reductase
(27)
Human (Homo sapiens) [TaxId: 9606]
(22)
2a
d3djja1
A:17-165,A:291-363
2b
d3djja2
A:166-290
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Chain A
Asymmetric Unit 1
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