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3DJG
Asym. Unit
Info
Asym.Unit (90 KB)
Biol.Unit 1 (167 KB)
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(1)
Title
:
CATALYTIC CYCLE OF HUMAN GLUTATHIONE REDUCTASE NEAR 1 A RESOLUTION
Authors
:
D. S. Berkholz, H. R. Faber, S. N. Savvides, P. A. Karplus
Date
:
23 Jun 08 (Deposition) - 05 Aug 08 (Release) - 25 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : X
Biol. Unit 1: X (2x)
Keywords
:
Flavoenzyme, Glutathione, Nicotinamide, Alternative Initiation, Fad, Flavoprotein, Mitochondrion, Nadp, Oxidoreductase, Phosphoprotein, Redox-Active Center, Transit Peptide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. S. Berkholz, H. R. Faber, S. N. Savvides, P. A. Karplus
Catalytic Cycle Of Human Glutathione Reductase Near 1 A Resolution.
J. Mol. Biol. V. 382 371 2008
[
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
NDP
1
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY X:27 , GLY X:29 , SER X:30 , GLY X:31 , GLU X:50 , SER X:51 , HIS X:52 , GLY X:56 , THR X:57 , CYS X:58 , GLY X:62 , CYS X:63 , LYS X:66 , GLY X:128 , HIS X:129 , ALA X:130 , ALA X:155 , THR X:156 , GLY X:157 , ARG X:291 , LEU X:298 , GLY X:330 , ASP X:331 , LEU X:337 , LEU X:338 , THR X:339 , PRO X:340 , HIS X:467 , PRO X:468 , HOH X:485 , HOH X:487 , HOH X:493 , HOH X:498 , HOH X:534 , HOH X:795 , HOH X:827 , HOH X:832
BINDING SITE FOR RESIDUE FAD X 479
2
AC2
SOFTWARE
LYS X:66 , ALA X:195 , GLY X:196 , TYR X:197 , ILE X:198 , GLU X:201 , ARG X:218 , HIS X:219 , ARG X:224 , ILE X:289 , GLY X:290 , ARG X:291 , LEU X:337 , LEU X:338 , PHE X:372 , HOH X:507 , HOH X:510 , HOH X:520 , HOH X:535 , HOH X:568 , HOH X:592 , HOH X:797 , HOH X:839 , HOH X:840 , HOH X:853 , HOH X:939 , HOH X:990 , HOH X:998
BINDING SITE FOR RESIDUE NDP X 483
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_019079 (R109C, chain X, )
2: VAR_051775 (G188R, chain X, )
3: VAR_019080 (G188S, chain X, )
4: VAR_019081 (I217V, chain X, )
5: VAR_019082 (E253D, chain X, )
6: VAR_014554 (P270H, chain X, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019079
R
153
C
GSHR_HUMAN
Polymorphism
8190955
X
R
109
C
2
UniProt
VAR_051775
G
232
R
GSHR_HUMAN
Polymorphism
8190976
X
G
188
R
3
UniProt
VAR_019080
G
232
S
GSHR_HUMAN
Polymorphism
8190976
X
G
188
S
4
UniProt
VAR_019081
I
261
V
GSHR_HUMAN
Polymorphism
8190997
X
I
217
V
5
UniProt
VAR_019082
E
297
D
GSHR_HUMAN
Polymorphism
8191004
X
E
253
D
6
UniProt
VAR_014554
P
314
H
GSHR_HUMAN
Polymorphism
2020916
X
P
270
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PYRIDINE_REDOX_1 (X:55-65)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRIDINE_REDOX_1
PS00076
Pyridine nucleotide-disulphide oxidoreductases class-I active site.
GSHR_HUMAN
99-109
1
X:55-65
[
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Exons
(13, 13)
Info
All Exons
Exon 1.1a (X:18-58)
Exon 1.3 (X:59-67)
Exon 1.4 (X:68-97)
Exon 1.5 (X:97-120)
Exon 1.6 (X:121-170)
Exon 1.7 (X:170-188)
Exon 1.8b (X:188-221)
Exon 1.9 (X:222-250)
Exon 1.10b (X:251-303)
Exon 1.11 (X:304-341)
Exon 1.12b (X:341-385)
Exon 1.13 (X:385-429)
Exon 1.14b (X:430-478)
View:
Select:
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8b
08: Boundary 1.8b/1.9
09: Boundary 1.9/1.10b
10: Boundary 1.10b/1.11
11: Boundary 1.11/1.12b
12: Boundary 1.12b/1.13
13: Boundary 1.13/1.14b
14: Boundary 1.14b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000221130
1a
ENSE00001167123
chr8:
30585443-30585047
397
GSHR_HUMAN
1-102
102
1
X:18-58
41
1.3
ENST00000221130
3
ENSE00001158437
chr8:
30569605-30569579
27
GSHR_HUMAN
103-111
9
1
X:59-67
9
1.4
ENST00000221130
4
ENSE00001158427
chr8:
30567419-30567331
89
GSHR_HUMAN
112-141
30
1
X:68-97
30
1.5
ENST00000221130
5
ENSE00001158417
chr8:
30565658-30565589
70
GSHR_HUMAN
141-164
24
1
X:97-120
24
1.6
ENST00000221130
6
ENSE00001158408
chr8:
30560757-30560610
148
GSHR_HUMAN
165-214
50
1
X:121-170
50
1.7
ENST00000221130
7
ENSE00000687921
chr8:
30557652-30557598
55
GSHR_HUMAN
214-232
19
1
X:170-188
19
1.8b
ENST00000221130
8b
ENSE00000687915
chr8:
30553996-30553897
100
GSHR_HUMAN
232-265
34
1
X:188-221
34
1.9
ENST00000221130
9
ENSE00000687910
chr8:
30550572-30550486
87
GSHR_HUMAN
266-294
29
1
X:222-250
29
1.10b
ENST00000221130
10b
ENSE00000687906
chr8:
30546836-30546678
159
GSHR_HUMAN
295-347
53
1
X:251-303
53
1.11
ENST00000221130
11
ENSE00000687902
chr8:
30541716-30541605
112
GSHR_HUMAN
348-385
38
1
X:304-341
38
1.12b
ENST00000221130
12b
ENSE00000687899
chr8:
30539578-30539447
132
GSHR_HUMAN
385-429
45
1
X:341-385
45
1.13
ENST00000221130
13
ENSE00000687897
chr8:
30538554-30538421
134
GSHR_HUMAN
429-473
45
1
X:385-429
45
1.14b
ENST00000221130
14b
ENSE00002132314
chr8:
30537186-30535583
1604
GSHR_HUMAN
474-522
49
1
X:430-478
49
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain X
Asymmetric Unit 1
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