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3DJC
Asym. Unit
Info
Asym.Unit (490 KB)
Biol.Unit 1 (243 KB)
Biol.Unit 2 (247 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PANTOTHENATE KINASE FROM LEGIONELLA PNEUMOPHILA
Authors
:
Y. Patskovsky, J. B. Bonanno, R. Romero, M. Dickey, C. Logan, S. Wasserm M. Maletic, J. Koss, J. M. Sauder, S. K. Burley, S. C. Almo, New York Sg Research Center For Structural Genomics (Nysgxrc)
Date
:
23 Jun 08 (Deposition) - 15 Jul 08 (Release) - 24 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: G,H,I,J,K,L (1x)
Biol. Unit 2: A,B,C,D,E,F (1x)
Keywords
:
Structural Genomics, Pantothenate Kinase, Putative Transferase, Psi- 2, Protein Structure Initiative, New York Structural Genomix Research Consortium, Nysgxrc, Atp-Binding, Coenzyme A Biosynthesis, Kinase, Metal-Binding, Nucleotide-Binding, Transferase, New York Sgx Research Center For Structural Genomics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Patskovsky, J. B. Bonanno, R. Romero, M. Dickey, C. Logan, M. Maletic, S. Wasserman, J. Koss, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Pantothenate Kinase From Legionella Pneumophila
To Be Published
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Hetero Components
(1, 11)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
11
Ligand/Ion
GLYCEROL
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:157 , GLY A:195 , ALA A:199 , SER B:157
BINDING SITE FOR RESIDUE GOL A 265
02
AC2
SOFTWARE
ASP B:6 , ASP B:129 , GLY B:131 , THR B:132 , GLY B:223
BINDING SITE FOR RESIDUE GOL B 265
03
AC3
SOFTWARE
LEU H:151 , PRO H:152 , SER H:157 , GLY H:195
BINDING SITE FOR RESIDUE GOL H 265
04
AC4
SOFTWARE
ASN H:9 , ASP H:108 , ARG H:109 , THR H:132 , ALA H:133
BINDING SITE FOR RESIDUE GOL H 266
05
AC5
SOFTWARE
ASN I:164 , ARG J:155 , LEU J:156 , ASP J:159
BINDING SITE FOR RESIDUE GOL J 265
06
AC6
SOFTWARE
GLY K:195 , PRO L:152 , SER L:157 , GLY L:195
BINDING SITE FOR RESIDUE GOL L 265
07
AC7
SOFTWARE
SER C:162 , LYS C:163 , THR C:165 , ALA C:166
BINDING SITE FOR RESIDUE GOL C 265
08
AC8
SOFTWARE
PRO C:169 , SER C:170
BINDING SITE FOR RESIDUE GOL C 266
09
AC9
SOFTWARE
LEU A:168
BINDING SITE FOR RESIDUE GOL A 266
10
BC1
SOFTWARE
SER E:157 , PRO F:152 , GLY F:195
BINDING SITE FOR RESIDUE GOL E 266
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 24)
Info
All SCOP Domains
1a: SCOP_d3djca1 (A:1-122)
1b: SCOP_d3djca2 (A:123-255)
1c: SCOP_d3djcf1 (F:1-122)
1d: SCOP_d3djcf2 (F:123-256)
1e: SCOP_d3djcg1 (G:0-122)
1f: SCOP_d3djcg2 (G:123-255)
1g: SCOP_d3djch1 (H:1-122)
1h: SCOP_d3djch2 (H:123-255)
1i: SCOP_d3djci1 (I:1-122)
1j: SCOP_d3djci2 (I:123-255)
1k: SCOP_d3djcj1 (J:1-122)
1l: SCOP_d3djcj2 (J:123-255)
1m: SCOP_d3djcb1 (B:0-122)
1n: SCOP_d3djck1 (K:1-122)
1o: SCOP_d3djck2 (K:123-255)
1p: SCOP_d3djcl1 (L:1-122)
1q: SCOP_d3djcl2 (L:123-255)
1r: SCOP_d3djcb2 (B:123-255)
1s: SCOP_d3djcc1 (C:1-122)
1t: SCOP_d3djcc2 (C:123-256)
1u: SCOP_d3djcd1 (D:0-122)
1v: SCOP_d3djcd2 (D:123-256)
1w: SCOP_d3djce1 (E:1-122)
1x: SCOP_d3djce2 (E:123-256)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
automated matches
(111)
Protein domain
:
automated matches
(111)
Legionella pneumophila [TaxId: 272624]
(1)
1a
d3djca1
A:1-122
1b
d3djca2
A:123-255
1c
d3djcf1
F:1-122
1d
d3djcf2
F:123-256
1e
d3djcg1
G:0-122
1f
d3djcg2
G:123-255
1g
d3djch1
H:1-122
1h
d3djch2
H:123-255
1i
d3djci1
I:1-122
1j
d3djci2
I:123-255
1k
d3djcj1
J:1-122
1l
d3djcj2
J:123-255
1m
d3djcb1
B:0-122
1n
d3djck1
K:1-122
1o
d3djck2
K:123-255
1p
d3djcl1
L:1-122
1q
d3djcl2
L:123-255
1r
d3djcb2
B:123-255
1s
d3djcc1
C:1-122
1t
d3djcc2
C:123-256
1u
d3djcd1
D:0-122
1v
d3djcd2
D:123-256
1w
d3djce1
E:1-122
1x
d3djce2
E:123-256
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CATH Domains
(0, 0)
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Pfam Domains
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Show PDB file:
Asym.Unit (490 KB)
Header - Asym.Unit
Biol.Unit 1 (243 KB)
Header - Biol.Unit 1
Biol.Unit 2 (247 KB)
Header - Biol.Unit 2
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