PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3DIW
Asym. Unit
Info
Asym.Unit (45 KB)
Biol.Unit 1 (22 KB)
Biol.Unit 2 (21 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
C-TERMINAL BETA-CATENIN BOUND TIP-1 STRUCTURE
Authors
:
Y. Shen
Date
:
21 Jun 08 (Deposition) - 21 Oct 08 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Beta-Catenin, Tip-1, Tax-Interacting Protein-1, Pdz Domain, Nucleus, Wnt Signaling Pathway, Signaling Protein-Cell Adhesion Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Zhang, X. Yan, C. Shi, X. Yang, Y. Guo, C. Tian, J. Long, Y. Shen
Structural Basis Of Beta-Catenin Recognition By Tax-Interacting Protein-1
J. Mol. Biol. V. 384 255 2008
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:15-112,B:15-112)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
TX1B3_MOUSE
15-112
2
A:15-112
B:15-112
[
close PROSITE info
]
Exons
(1, 2)
Info
All Exons
Exon 1.20c (C:773-781 | D:773-781)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.19/1.20c
2: Boundary 1.20c/1.20g
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4e
ENST00000396185
4e
ENSE00001933873
chr3:
41240996-41241161
166
CTNB1_HUMAN
-
0
0
-
-
1.7
ENST00000396185
7
ENSE00002142861
chr3:
41265512-41265572
61
CTNB1_HUMAN
1-5
5
0
-
-
1.9e
ENST00000396185
9e
ENSE00001697426
chr3:
41266017-41266244
228
CTNB1_HUMAN
5-81
77
0
-
-
1.10d
ENST00000396185
10d
ENSE00001748344
chr3:
41266445-41266698
254
CTNB1_HUMAN
81-165
85
0
-
-
1.11b
ENST00000396185
11b
ENSE00001692569
chr3:
41266825-41267063
239
CTNB1_HUMAN
166-245
80
0
-
-
1.12
ENST00000396185
12
ENSE00001643204
chr3:
41267151-41267352
202
CTNB1_HUMAN
245-312
68
0
-
-
1.13
ENST00000396185
13
ENSE00001767208
chr3:
41268699-41268843
145
CTNB1_HUMAN
313-361
49
0
-
-
1.14
ENST00000396185
14
ENSE00001649367
chr3:
41274832-41274935
104
CTNB1_HUMAN
361-395
35
0
-
-
1.15
ENST00000396185
15
ENSE00001718373
chr3:
41275020-41275358
339
CTNB1_HUMAN
396-508
113
0
-
-
1.16a
ENST00000396185
16a
ENSE00001592339
chr3:
41275630-41275788
159
CTNB1_HUMAN
509-561
53
0
-
-
1.17b
ENST00000396185
17b
ENSE00001707050
chr3:
41277215-41277334
120
CTNB1_HUMAN
562-601
40
0
-
-
1.18a
ENST00000396185
18a
ENSE00002175036
chr3:
41277840-41277990
151
CTNB1_HUMAN
602-652
51
0
-
-
1.18d
ENST00000396185
18d
ENSE00001782706
chr3:
41278079-41278200
122
CTNB1_HUMAN
652-692
41
0
-
-
1.19
ENST00000396185
19
ENSE00001805633
chr3:
41279507-41279567
61
CTNB1_HUMAN
693-713
21
0
-
-
1.20c
ENST00000396185
20c
ENSE00001524181
chr3:
41280625-41280845
221
CTNB1_HUMAN
713-781
69
2
C:773-781
D:773-781
9
9
1.20g
ENST00000396185
20g
ENSE00001524178
chr3:
41281151-41281934
784
CTNB1_HUMAN
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3diwB00 (B:11-116)
1b: CATH_3diwA00 (A:8-115)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Mouse (Mus musculus)
(7)
1a
3diwB00
B:11-116
1b
3diwA00
A:8-115
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (45 KB)
Header - Asym.Unit
Biol.Unit 1 (22 KB)
Header - Biol.Unit 1
Biol.Unit 2 (21 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3DIW
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
