PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3DHW
Biol. Unit 1
Info
Asym.Unit (347 KB)
Biol.Unit 1 (173 KB)
Biol.Unit 2 (173 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF METHIONINE IMPORTER METNI
Authors
:
D. C. Rees, J. T. Kaiser, N. S. Kadaba, E. Johnson, A. T. Lee
Date
:
18 Jun 08 (Deposition) - 05 Aug 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Abc-Transporter, Methionine Uptake Transporter, Membrane Protein, Amino-Acid Transport, Inner Membrane, Transmembrane, Atp-Binding, Hydrolase, Nucleotide-Binding, Membrane Protein-Hydrolase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. S. Kadaba, J. T. Kaiser, E. Johnson, A. Lee, D. C. Rees
The High-Affinity E. Coli Methionine Abc Transporter: Structure And Allosteric Regulation.
Science V. 321 250 2008
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ABC_TM1 (A:13-204,B:13-204)
2: ABC_TRANSPORTER_1 (C:141-155,D:141-155)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ABC_TM1
PS50928
ABC transporter integral membrane type-1 domain profile.
METI_ECOLI
13-204
2
A:13-204
B:13-204
-
-
2
ABC_TRANSPORTER_1
PS00211
ABC transporters family signature.
METN_ECOLI
141-155
2
C:141-155
D:141-155
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d3dhwc2 (C:241-343)
1b: SCOP_d3dhwd2 (D:241-343)
1c: SCOP_d3dhwg2 (G:241-343)
1d: SCOP_d3dhwh2 (H:241-343)
2a: SCOP_d3dhwc1 (C:1-240)
2b: SCOP_d3dhwd1 (D:1-240)
2c: SCOP_d3dhwg1 (G:1-240)
2d: SCOP_d3dhwh1 (H:1-240)
3a: SCOP_d3dhwa1 (A:6-208)
3b: SCOP_d3dhwb1 (B:6-208)
3c: SCOP_d3dhwe1 (E:6-208)
3d: SCOP_d3dhwf1 (F:6-208)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
ACT-like
(63)
Family
:
NIL domain-like
(5)
Protein domain
:
Methionine import ATP-binding protein MetN
(3)
Escherichia coli [TaxId: 562]
(2)
1a
d3dhwc2
C:241-343
1b
d3dhwd2
D:241-343
1c
d3dhwg2
G:241-343
1d
d3dhwh2
H:241-343
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
Methionine import ATP-binding protein MetN
(1)
Escherichia coli [TaxId: 562]
(1)
2a
d3dhwc1
C:1-240
2b
d3dhwd1
D:1-240
2c
d3dhwg1
G:1-240
2d
d3dhwh1
H:1-240
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
MetI-like
(24)
Superfamily
:
MetI-like
(24)
Family
:
MetI-like
(24)
Protein domain
:
D-methionine transport system permease protein MetI
(1)
Escherichia coli [TaxId: 562]
(1)
3a
d3dhwa1
A:6-208
3b
d3dhwb1
B:6-208
3c
d3dhwe1
E:6-208
3d
d3dhwf1
F:6-208
[
close SCOP info
]
CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_3dhwC02 (C:230-343)
1b: CATH_3dhwD02 (D:230-343)
1c: CATH_3dhwG02 (G:230-343)
1d: CATH_3dhwH02 (H:230-343)
2a: CATH_3dhwC01 (C:1-229)
2b: CATH_3dhwD01 (D:1-229)
2c: CATH_3dhwG01 (G:1-229)
2d: CATH_3dhwH01 (H:1-229)
3a: CATH_3dhwA00 (A:6-208)
3b: CATH_3dhwB00 (B:6-208)
3c: CATH_3dhwE00 (E:6-208)
3d: CATH_3dhwF00 (F:6-208)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.260, no name defined]
(34)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(2)
1a
3dhwC02
C:230-343
1b
3dhwD02
D:230-343
1c
3dhwG02
G:230-343
1d
3dhwH02
H:230-343
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(8)
2a
3dhwC01
C:1-229
2b
3dhwD01
D:1-229
2c
3dhwG01
G:1-229
2d
3dhwH01
H:1-229
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
MetI-like fold
(4)
Homologous Superfamily
:
MetI-like domain
(4)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(2)
3a
3dhwA00
A:6-208
3b
3dhwB00
B:6-208
3c
3dhwE00
E:6-208
3d
3dhwF00
F:6-208
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (347 KB)
Header - Asym.Unit
Biol.Unit 1 (173 KB)
Header - Biol.Unit 1
Biol.Unit 2 (173 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3DHW
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
