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3DGY
Asym. Unit
Info
Asym.Unit (60 KB)
Biol.Unit 1 (19 KB)
Biol.Unit 2 (19 KB)
Biol.Unit 3 (18 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RIBONUCLEASE SA2 WITH GUANOSINE-2'-CYCLOPHOSPHATE
Authors
:
J. Sevcik, V. Bauerova-Hlinkova
Date
:
16 Jun 08 (Deposition) - 16 Jun 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Ribonuclease, Hydrolase, Protein-Mononucleotide Complex, Guanosine- 2'-Monophosphate, Mononucleotide
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
V. Bauerova-Hlinkova, R. Dvorsky, D. Perecko, F. Povazanec, J. Sevci
Structure Of Rnase Sa2 Complexes With Mononucleotides - New Aspects Of Catalytic Reaction And Substrate Recognition
Febs J. V. 276 4156 2009
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: GUANOSINE-2'-MONOPHOSPHATE (2GPa)
2a: BETA-D-GLUCOSE (BGCa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
2GP
1
Ligand/Ion
GUANOSINE-2'-MONOPHOSPHATE
2
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
3
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:31 , TYR A:32 , ASN A:33 , ARG A:34 , HOH A:173 , HOH A:198 , GLU B:40
BINDING SITE FOR RESIDUE BGC A 99
2
AC2
SOFTWARE
ARG A:34 , GLU A:56 , ARG A:67 , ARG A:71 , HIS A:86 , TYR A:87 , HOH A:158 , ARG C:45
BINDING SITE FOR RESIDUE SO4 A 98
3
AC3
SOFTWARE
SER A:15 , GLU B:43 , ARG B:45 , HOH B:218 , HOH B:255
BINDING SITE FOR RESIDUE SO4 B 100
4
AC4
SOFTWARE
ARG A:42 , ARG C:34 , GLU C:56 , ARG C:67 , ARG C:71 , HIS C:86 , TYR C:87 , HOH C:234
BINDING SITE FOR RESIDUE SO4 C 198
5
AC5
SOFTWARE
ARG B:34 , VAL B:38 , PHE B:39 , GLU B:40 , ASN B:41 , ARG B:42 , GLU B:43 , GLU B:56 , ARG B:67 , ARG B:71 , HIS B:86 , TYR B:87
BINDING SITE FOR RESIDUE 2GP B 98
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3dgya_ (A:)
1b: SCOP_d3dgyb_ (B:)
1c: SCOP_d3dgyc_ (C:)
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Microbial ribonucleases
(174)
Superfamily
:
Microbial ribonucleases
(174)
Family
:
Bacterial ribonucleases
(89)
Protein domain
:
automated matches
(9)
Streptomyces aureofaciens [TaxId: 1894]
(8)
1a
d3dgya_
A:
1b
d3dgyb_
B:
1c
d3dgyc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_3dgyB00 (B:1-97)
1b: CATH_3dgyA00 (A:4-97)
1c: CATH_3dgyC00 (C:5-97)
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)
(
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.30, no name defined]
(159)
Streptomyces aureofaciens. Organism_taxid: 1894. Strain: r8/26.
(4)
1a
3dgyB00
B:1-97
1b
3dgyA00
A:4-97
1c
3dgyC00
C:5-97
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Pfam Domains
(0, 0)
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Asym.Unit (60 KB)
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