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Biol. Unit 1
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Asym.Unit (158 KB)
Biol.Unit 1 (149 KB)
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(1)
Title
:
CALCIUM-DEPENDENT COMPLEX BETWEEN M-CALPAIN AND CALPASTATIN
Authors
:
T. Moldoveanu, K. Gehring, D. R. Green
Date
:
11 Jun 08 (Deposition) - 11 Nov 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Protease Core Domain, Penta Ef-Hand Domains, C2-Like Domain, Inhibitor Loop-Out, Hydrolase, Membrane, Protease, Thiol Protease, Phosphoprotein, Protease Inhibitor, Thiol Protease Inhibitor
(Keyword Search:
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Reference
:
T. Moldoveanu, K. Gehring, D. R. Green
Concerted Multi-Pronged Attack By Calpastatin To Occlude Th Catalytic Cleft Of Heterodimeric Calpains.
Nature V. 456 404 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:89 , GLY A:90 , GLY A:91 , ASP A:96 , GLU A:175
BINDING SITE FOR RESIDUE CA A 715
02
AC2
SOFTWARE
GLU A:292 , ASP A:299 , GLN A:319 , ASP A:321 , GLU A:323
BINDING SITE FOR RESIDUE CA A 716
03
AC3
SOFTWARE
ALA A:542 , ASP A:545 , ALA A:546 , GLU A:547 , GLU A:552
BINDING SITE FOR RESIDUE CA A 717
04
AC4
SOFTWARE
GLU A:547 , ASP A:585 , ASP A:587 , SER A:589 , LYS A:591 , GLU A:596
BINDING SITE FOR RESIDUE CA A 718
05
AC5
SOFTWARE
ASP A:615 , ASP A:617 , SER A:619 , THR A:621 , GLU A:626
BINDING SITE FOR RESIDUE CA A 719
06
AC6
SOFTWARE
ASP A:570 , ASP A:658 , ASP A:660 , ASN A:661
BINDING SITE FOR RESIDUE CA A 720
07
AC7
SOFTWARE
ALA B:111 , ASP B:114 , GLU B:116 , GLU B:121
BINDING SITE FOR RESIDUE CA B 601
08
AC8
SOFTWARE
GLU B:116 , ASP B:154 , ASP B:156 , THR B:158 , LYS B:160 , LEU B:161 , GLY B:162 , GLU B:165
BINDING SITE FOR RESIDUE CA B 602
09
AC9
SOFTWARE
ASP B:184 , ASP B:186 , SER B:188 , THR B:190 , GLU B:195
BINDING SITE FOR RESIDUE CA B 603
10
BC1
SOFTWARE
ASP B:139 , ASP B:227 , ASP B:229 , ASN B:230
BINDING SITE FOR RESIDUE CA B 604
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(4, 12)
Info
All PROSITE Patterns/Profiles
1: CALPAIN_CAT (A:45-344)
2: THIOL_PROTEASE_CYS (A:99-110)
3: EF_HAND_1 ()
4: EF_HAND_2 ()
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CALPAIN_CAT
PS50203
Cysteine proteinase, calpain-type, catalytic domain profile.
CAN2_RAT
45-344
1
A:45-344
2
THIOL_PROTEASE_CYS
PS00139
Eukaryotic thiol (cysteine) proteases cysteine active site.
CAN2_RAT
99-110
1
A:99-110
3
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CPNS1_RAT
154-166
184-196
2
B:154-166
B:184-196
CAN2_RAT
585-597
615-627
2
A:585-597
A:615-627
4
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CPNS1_RAT
171-206
141-169
236-270
3
B:171-206
B:141-169
B:236-270
CAN2_RAT
602-637
572-597
667-700
3
A:602-637
A:572-597
A:667-700
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3df0b_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Penta-EF-hand proteins
(30)
Protein domain
:
Calpain small (regulatory) subunit (domain VI)
(16)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(8)
1a
d3df0b_
B:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3df0B00 (B:97-270)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Rat (Rattus norvegicus)
(6)
1a
3df0B00
B:97-270
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (158 KB)
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