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Asym. Unit
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Asym.Unit (30 KB)
Biol.Unit 1 (18 KB)
Biol.Unit 2 (15 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE B2 BOX FROM MURF1 IN DIMERIC STATE
Authors
:
O. Mayans, M. Mrosek
Date
:
06 Jun 08 (Deposition) - 07 Oct 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C (2x)
Keywords
:
Zinc-Binding Motif, Ring-Like Fold, Coiled Coil, Cytoplasm, Ligase, Metal-Binding, Muscle Protein, Nucleus, Polymorphism, Ubl Conjugation Pathway, Zinc, Zinc-Finger
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Mrosek, S. Meier, Z. Ucurum-Fotiadis, E. Von Castelmur, E. Hedbom, A. Lustig, S. Grzesiek, D. Labeit, S. Labeit, O. Mayans
Structural Analysis Of B-Box 2 From Murf1: Identification Of A Novel Self-Association Pattern In A Ring-Like Fold
Biochemistry V. 47 10722 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
6
Ligand/Ion
ZINC ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:6 , HIS A:9 , CYS A:26 , CYS A:29
BINDING SITE FOR RESIDUE ZN A 46
2
AC2
SOFTWARE
CYS A:18 , CYS A:21 , HIS A:35 , CYS A:38
BINDING SITE FOR RESIDUE ZN A 47
3
AC3
SOFTWARE
CYS B:6 , HIS B:9 , CYS B:26 , CYS B:29
BINDING SITE FOR RESIDUE ZN B 46
4
AC4
SOFTWARE
CYS B:18 , CYS B:21 , HIS B:35 , CYS B:38
BINDING SITE FOR RESIDUE ZN B 47
5
AC5
SOFTWARE
CYS C:18 , CYS C:21 , HIS C:35 , CYS C:38
BINDING SITE FOR RESIDUE ZN C 46
6
AC6
SOFTWARE
CYS C:6 , HIS C:9 , CYS C:26 , CYS C:29
BINDING SITE FOR RESIDUE ZN C 47
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SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_074098 (E10D, chain A/B/C, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_074098
E
126
D
TRI63_HUMAN
Polymorphism
142601731
A/B/C
E
10
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: ZF_BBOX (A:1-43,B:1-43,C:1-43)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_BBOX
PS50119
Zinc finger B-box type profile.
TRI63_HUMAN
117-159
3
A:1-43
B:1-43
C:1-43
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Exons
(2, 5)
Info
All Exons
Exon 1.2 (A:-2-0 (gaps) | B:-2-0 (gaps) | -)
Exon 1.3b (A:1-45 | B:1-44 | C:1-44)
View:
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All Exon Boundaries
1: Boundary 1.1b/1.2
2: Boundary 1.2/1.3b
3: Boundary 1.3b/1.4
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000374272
1b
ENSE00001462989
chr1:
26394124-26393827
298
TRI63_HUMAN
1-53
53
0
-
-
1.2
ENST00000374272
2
ENSE00001036617
chr1:
26392931-26392759
173
TRI63_HUMAN
54-111
58
2
A:-2-0 (gaps)
B:-2-0 (gaps)
-
6
6
-
1.3b
ENST00000374272
3b
ENSE00001036615
chr1:
26387825-26387657
169
TRI63_HUMAN
111-167
57
3
A:1-45
B:1-44
C:1-44
45
44
44
1.4
ENST00000374272
4
ENSE00001036596
chr1:
26386852-26386757
96
TRI63_HUMAN
168-199
32
0
-
-
1.5
ENST00000374272
5
ENSE00001036620
chr1:
26385114-26384881
234
TRI63_HUMAN
200-277
78
0
-
-
1.6
ENST00000374272
6
ENSE00001036623
chr1:
26384141-26384119
23
TRI63_HUMAN
278-285
8
0
-
-
1.7
ENST00000374272
7
ENSE00001036610
chr1:
26383818-26383694
125
TRI63_HUMAN
285-327
43
0
-
-
1.8
ENST00000374272
8
ENSE00001154105
chr1:
26380455-26380384
72
TRI63_HUMAN
327-351
25
0
-
-
1.9
ENST00000374272
9
ENSE00001462984
chr1:
26378374-26377795
580
TRI63_HUMAN
351-353
3
0
-
-
[
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3ddta_ (A:)
1b: SCOP_d3ddtb_ (B:)
1c: SCOP_d3ddtc_ (C:)
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Class
:
Small proteins
(3458)
Fold
:
B-box zinc-binding domain
(11)
Superfamily
:
B-box zinc-binding domain
(11)
Family
:
B-box zinc-binding domain
(10)
Protein domain
:
automated matches
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d3ddta_
A:
1b
d3ddtb_
B:
1c
d3ddtc_
C:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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