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3DDK
Asym. Unit
Info
Asym.Unit (86 KB)
Biol.Unit 1 (81 KB)
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(1)
Title
:
COXSACKIEVIRUS B3 3DPOL RNA DEPENDENT RNA POLYMERASE
Authors
:
G. Campagnola, M. H. Weygandt, K. E. Scoggin, O. B. Peersen
Date
:
05 Jun 08 (Deposition) - 23 Sep 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Rna Polymerase, Viral Polymerase, Rna Virus, Transferase, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Campagnola, M. H. Weygandt, K. E. Scoggin, O. B. Peersen
Crystal Structure Of Coxsackievirus B3 3Dpol Highlights Functional Importance Of Residue 5 In Picornaviral Polymerases
J. Virol. V. 82 9458 2008
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
1c: SODIUM ION (NAc)
1d: SODIUM ION (NAd)
1e: SODIUM ION (NAe)
1f: SODIUM ION (NAf)
1g: SODIUM ION (NAg)
1h: SODIUM ION (NAh)
1i: SODIUM ION (NAi)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NA
9
Ligand/Ion
SODIUM ION
2
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:188 , SER A:292 , GLY A:293 , HOH A:565
BINDING SITE FOR RESIDUE NA A 906
02
AC2
SOFTWARE
LEU A:229 , GLU A:366 , HOH A:625
BINDING SITE FOR RESIDUE NA A 907
03
AC3
SOFTWARE
ASP A:71 , GLU A:72 , HOH A:548
BINDING SITE FOR RESIDUE NA A 910
04
AC4
SOFTWARE
HIS A:199 , HOH A:565 , HOH A:594
BINDING SITE FOR RESIDUE NA A 912
05
AC5
SOFTWARE
GLU A:35 , HIS A:399
BINDING SITE FOR RESIDUE NA A 913
06
AC6
SOFTWARE
LYS A:315 , HOH A:659
BINDING SITE FOR RESIDUE NA A 918
07
AC7
SOFTWARE
LYS A:38 , ARG A:163 , ARG A:174 , LYS A:376
BINDING SITE FOR RESIDUE SO4 A 919
08
AC8
SOFTWARE
ARG A:174 , TYR A:234 , GLY A:236 , HOH A:630 , HOH A:673 , HOH A:770
BINDING SITE FOR RESIDUE SO4 A 920
09
AC9
SOFTWARE
ARG A:44 , SER A:45 , ARG A:277
BINDING SITE FOR RESIDUE SO4 A 921
10
BC1
SOFTWARE
PRO A:243 , ASP A:267 , CYS A:270
BINDING SITE FOR RESIDUE SO4 A 922
11
BC2
SOFTWARE
LEU A:110 , ASP A:111 , ARG A:188 , HOH A:587
BINDING SITE FOR RESIDUE SO4 A 923
12
BC3
SOFTWARE
GLY A:227 , HIS A:228 , LEU A:229 , GLU A:366 , THR A:368 , HOH A:620
BINDING SITE FOR RESIDUE SO4 A 924
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3ddka_ (A:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
automated matches
(100)
Human coxsackievirus [TaxId: 12072]
(1)
1a
d3ddka_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (86 KB)
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