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3DC1
Asym. Unit
Info
Asym.Unit (288 KB)
Biol.Unit 1 (143 KB)
Biol.Unit 2 (144 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF KYNURENINE AMINOTRANSFERASE II COMPLEX WITH ALPHA-KETOGLUTARATE
Authors
:
Q. Han, T. Cai, D. A. Tagle, H. Robinson, J. Li
Date
:
03 Jun 08 (Deposition) - 29 Jul 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Alpha & Beta Protein, Plp-Dependent Transferase, Aminotransferase, Multifunctional Enzyme, Pyridoxal Phosphate, Mitochondrion, Transferase, Transit Peptide
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
Q. Han, T. Cai, D. A. Tagle, H. Robinson, J. Li
Substrate Specificity And Structure Of Human Aminoadipate Aminotransferase/Kynurenine Aminotransferase Ii
Biosci. Rep. V. 28 205 2008
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: 2-OXOGLUTARIC ACID (AKGa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPa)
3b: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPb)
3c: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPc)
3d: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AKG
1
Ligand/Ion
2-OXOGLUTARIC ACID
2
GOL
6
Ligand/Ion
GLYCEROL
3
LLP
4
Mod. Amino Acid
2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:18 , GLY A:39 , LEU A:293 , TYR B:142 , LLP B:263
BINDING SITE FOR RESIDUE AKG A 426
2
AC2
SOFTWARE
GLN A:118 , TYR A:142 , LLP A:263 , ILE B:19 , TYR B:74 , LEU B:293
BINDING SITE FOR RESIDUE GOL A 427
3
AC3
SOFTWARE
PRO A:16 , PRO A:18 , HOH A:653
BINDING SITE FOR RESIDUE GOL A 428
4
AC4
SOFTWARE
ILE C:19 , GLY C:39 , TYR C:74 , GLN D:118 , LLP D:263
BINDING SITE FOR RESIDUE GOL C 426
5
AC5
SOFTWARE
GLY C:29 , PRO C:30 , VAL D:375
BINDING SITE FOR RESIDUE GOL C 427
6
AC6
SOFTWARE
TYR C:142 , TYR C:233 , LLP C:263 , MET C:354 , ILE D:19 , GLY D:39 , TYR D:74
BINDING SITE FOR RESIDUE GOL D 426
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_061005 (V243I, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_061005
V
243
I
AADAT_HUMAN
Polymorphism
56350236
A/B/C/D
V
243
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(13, 52)
Info
All Exons
Exon 1.4b (A:1-18 | B:1-20 | C:1-23 | D:1-20)
Exon 1.6a (A:29-79 | B:29-79 | C:23-79 | D:28...)
Exon 1.7 (A:79-123 | B:79-123 | C:79-123 | D...)
Exon 1.8 (A:124-148 | B:124-148 | C:124-148 ...)
Exon 1.9c (A:149-218 | B:149-218 | C:149-218 ...)
Exon 1.10b (A:219-240 | B:219-240 | C:219-240 ...)
Exon 1.11 (A:241-268 | B:241-268 | C:241-268 ...)
Exon 1.12 (A:268-300 | B:268-300 | C:268-300 ...)
Exon 1.13 (A:301-321 | B:301-321 | C:301-321 ...)
Exon 1.14 (A:321-343 | B:321-343 | C:321-343 ...)
Exon 1.15 (A:343-378 | B:343-378 | C:343-378 ...)
Exon 1.16 (A:379-412 | B:379-412 | C:379-412 ...)
Exon 1.17a (A:413-425 | B:413-425 | C:413-425 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.3c/1.4b
02: Boundary 1.4b/1.6a
03: Boundary 1.6a/1.7
04: Boundary 1.7/1.8
05: Boundary 1.8/1.9c
06: Boundary 1.9c/1.10b
07: Boundary 1.10b/1.11
08: Boundary 1.11/1.12
09: Boundary 1.12/1.13
10: Boundary 1.13/1.14
11: Boundary 1.14/1.15
12: Boundary 1.15/1.16
13: Boundary 1.16/1.17a
14: Boundary 1.17a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3c
ENST00000353187
3c
ENSE00001220119
chr4:
171011372-171011295
78
AADAT_HUMAN
-
0
0
-
-
1.4b
ENST00000353187
4b
ENSE00001139506
chr4:
171010887-171010775
113
AADAT_HUMAN
1-23
23
4
A:1-18
B:1-20
C:1-23
D:1-20
18
20
23
20
1.6a
ENST00000353187
6a
ENSE00000970552
chr4:
171009715-171009547
169
AADAT_HUMAN
23-79
57
4
A:29-79
B:29-79
C:23-79
D:28-79
51
51
57
52
1.7
ENST00000353187
7
ENSE00000741009
chr4:
171008399-171008267
133
AADAT_HUMAN
79-123
45
4
A:79-123
B:79-123
C:79-123
D:79-123
45
45
45
45
1.8
ENST00000353187
8
ENSE00000970553
chr4:
170999734-170999660
75
AADAT_HUMAN
124-148
25
4
A:124-148
B:124-148
C:124-148
D:124-148
25
25
25
25
1.9c
ENST00000353187
9c
ENSE00000970554
chr4:
170994496-170994287
210
AADAT_HUMAN
149-218
70
4
A:149-218
B:149-218
C:149-218
D:149-218
70
70
70
70
1.10b
ENST00000353187
10b
ENSE00000970555
chr4:
170991803-170991738
66
AADAT_HUMAN
219-240
22
4
A:219-240
B:219-240
C:219-240
D:219-240
22
22
22
22
1.11
ENST00000353187
11
ENSE00000970556
chr4:
170990381-170990299
83
AADAT_HUMAN
241-268
28
4
A:241-268
B:241-268
C:241-268
D:241-268
28
28
28
28
1.12
ENST00000353187
12
ENSE00000970557
chr4:
170989838-170989742
97
AADAT_HUMAN
268-300
33
4
A:268-300
B:268-300
C:268-300
D:268-300
33
33
33
33
1.13
ENST00000353187
13
ENSE00000970558
chr4:
170988539-170988478
62
AADAT_HUMAN
301-321
21
4
A:301-321
B:301-321
C:301-321
D:301-321
21
21
21
21
1.14
ENST00000353187
14
ENSE00000970559
chr4:
170987629-170987565
65
AADAT_HUMAN
321-343
23
4
A:321-343
B:321-343
C:321-343
D:321-343
23
23
23
23
1.15
ENST00000353187
15
ENSE00001151624
chr4:
170985976-170985870
107
AADAT_HUMAN
343-378
36
4
A:343-378
B:343-378
C:343-378
D:343-378
36
36
36
36
1.16
ENST00000353187
16
ENSE00001151616
chr4:
170983144-170983043
102
AADAT_HUMAN
379-412
34
4
A:379-412
B:379-412
C:379-412
D:379-412
34
34
34
34
1.17a
ENST00000353187
17a
ENSE00002069309
chr4:
170982120-170981380
741
AADAT_HUMAN
413-425
13
4
A:413-425
B:413-425
C:413-425
D:413-425
13
13
13
13
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3dc1a_ (A:)
1b: SCOP_d3dc1b_ (B:)
1c: SCOP_d3dc1c_ (C:)
1d: SCOP_d3dc1d_ (D:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
automated matches
(163)
Protein domain
:
automated matches
(163)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d3dc1a_
A:
1b
d3dc1b_
B:
1c
d3dc1c_
C:
1d
d3dc1d_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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