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3DBK
Asym. Unit
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Asym.Unit (61 KB)
Biol.Unit 1 (57 KB)
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(1)
Title
:
PSEUDOMONAS AERUGINOSA ELASTASE WITH PHOSPHORAMIDON
Authors
:
D. B. Mckay, M. T. Overgaard
Date
:
01 Jun 08 (Deposition) - 07 Jul 09 (Release) - 14 Jul 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Zinc Metalloprotease, Enzyme, Phosphoramidon, Protease Inhibitor Complex, Calcium, Hydrolase, Metal-Binding, Metalloprotease, Protease, Secreted, Zinc, Zymogen
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. T. Overgaard, D. B. Mckay
Structure Of The Elastase Of Pseudomonas Aeruginosa Complexed With Phosphoramidon
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDRO... (RDFa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
4a: ZINC ION (ZNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
RDF
1
Ligand/Ion
N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L-LEUCYL-L-TRYPTOPHAN
3
SO4
3
Ligand/Ion
SULFATE ION
4
ZN
1
Ligand/Ion
ZINC ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:140 , HIS A:144 , GLU A:164 , RDF A:2001
BINDING SITE FOR RESIDUE ZN A 302
2
AC2
SOFTWARE
ASP A:136 , GLU A:172 , GLU A:175 , ASP A:183 , LEU A:185 , HOH A:3058
BINDING SITE FOR RESIDUE CA A 303
3
AC3
SOFTWARE
LYS A:11 , TYR A:188 , GLY A:193 , SER A:194 , GLY A:195 , TYR A:258 , ARG A:274 , HOH A:3296
BINDING SITE FOR RESIDUE SO4 A 401
4
AC4
SOFTWARE
ARG A:29 , GLN A:65 , ASN A:67 , GLY A:68 , HOH A:3331
BINDING SITE FOR RESIDUE SO4 A 402
5
AC5
SOFTWARE
LYS A:85 , ARG A:88 , HOH A:3055
BINDING SITE FOR RESIDUE SO4 A 403
6
AC6
SOFTWARE
GLU A:111 , ASN A:112 , ALA A:113 , TYR A:114 , MET A:128 , PHE A:129 , LEU A:132 , HIS A:140 , GLU A:141 , HIS A:144 , TYR A:155 , GLU A:164 , LEU A:197 , ARG A:198 , ASN A:212 , HIS A:223 , ARG A:231 , ARG A:288 , SER A:291 , THR A:292 , ZN A:302 , HOH A:3003 , HOH A:3034 , HOH A:3075 , HOH A:3209 , HOH A:3210
BINDING SITE FOR RESIDUE RDF A 2001
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_ELAS_PSEAE_004 (K14I, chain A, )
2: VAR_ELAS_PSEAE_005 (S44G, chain A, )
3: VAR_ELAS_PSEAE_006 (K85D, chain A, )
4: VAR_ELAS_PSEAE_007 (M128V, chain A, )
5: VAR_ELAS_PSEAE_008 (R274S, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_ELAS_PSEAE_004
*
K
211
I
ELAS_PSEAE
---
---
A
K
14
I
2
UniProt
VAR_ELAS_PSEAE_005
*
S
241
G
ELAS_PSEAE
---
---
A
S
44
G
3
UniProt
VAR_ELAS_PSEAE_006
*
K
282
D
ELAS_PSEAE
---
---
A
K
85
D
4
UniProt
VAR_ELAS_PSEAE_007
*
M
325
V
ELAS_PSEAE
---
---
A
M
128
V
5
UniProt
VAR_ELAS_PSEAE_008
*
R
471
S
ELAS_PSEAE
---
---
A
R
274
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:137-146)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ELAS_PSEAE
334-343
1
A:137-146
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3dbka_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Thermolysin-like
(130)
Protein domain
:
Elastase
(3)
Pseudomonas aeruginosa [TaxId: 287]
(3)
1a
d3dbka_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_3dbkA01 (A:1-152)
2a: CATH_3dbkA02 (A:153-298)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Elastase; domain 1
(68)
Homologous Superfamily
:
[code=3.10.170.10, no name defined]
(67)
Pseudomonas aeruginosa. Organism_taxid: 287.
(2)
1a
3dbkA01
A:1-152
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Neutral Protease; domain 2
(68)
Homologous Superfamily
:
Neutral Protease Domain 2
(68)
Pseudomonas aeruginosa. Organism_taxid: 287.
(2)
2a
3dbkA02
A:153-298
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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