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3DBJ
Biol. Unit 4
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Asym.Unit (219 KB)
Biol.Unit 1 (159 KB)
Biol.Unit 2 (161 KB)
Biol.Unit 3 (160 KB)
Biol.Unit 4 (161 KB)
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(1)
Title
:
ALLOPHYCOCYANIN FROM THERMOSYNECHOCOCCUS VULCANUS
Authors
:
N. Adir, M. Klartag, A. Mcgregor, L. David
Date
:
01 Jun 08 (Deposition) - 11 Nov 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (3x)
Biol. Unit 2: C,D (3x)
Biol. Unit 3: E,F (3x)
Biol. Unit 4: G,H (3x)
Keywords
:
Phycobilisome, Light Harvesting, Photosynthesis, Energy Transfer, Cyanobacteria
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Mcgregor, M. Klartag, L. David, N. Adir
Allophycocyanin Trimer Stability And Functionality Are Primarily Due To Polar Enhanced Hydrophobicity Of The Phycocyanobilin Binding Pocket
J. Mol. Biol. V. 384 406 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: PHYCOCYANOBILIN (CYCa)
1b: PHYCOCYANOBILIN (CYCb)
1c: PHYCOCYANOBILIN (CYCc)
1d: PHYCOCYANOBILIN (CYCd)
1e: PHYCOCYANOBILIN (CYCe)
1f: PHYCOCYANOBILIN (CYCf)
1g: PHYCOCYANOBILIN (CYCg)
1h: PHYCOCYANOBILIN (CYCh)
2a: N-METHYL ASPARAGINE (MENa)
2b: N-METHYL ASPARAGINE (MENb)
2c: N-METHYL ASPARAGINE (MENc)
2d: N-METHYL ASPARAGINE (MENd)
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Label:
No.
Name
Count
Type
Full Name
1
CYC
6
Ligand/Ion
PHYCOCYANOBILIN
2
MEN
3
Mod. Amino Acid
N-METHYL ASPARAGINE
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Sites
(2, 2)
Info
All Sites
1: AC7 (SOFTWARE)
2: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
VAL G:66 , ASN G:72 , MET G:80 , THR G:83 , CYS G:84 , ARG G:86 , ASP G:87 , LEU G:88 , TYR G:90 , TYR G:91 , ILE G:110 , MET G:118 , ALA G:128 , VAL G:129 , TYR H:62 , THR H:66 , TYR H:76 , THR H:77 , TYR H:81
BINDING SITE FOR RESIDUE CYC G 201
2
AC8
SOFTWARE
MEN H:71 , MET H:75 , ARG H:80 , CYS H:84 , ASP H:87 , TYR H:90 , TYR H:91 , ARG H:110 , VAL H:124 , PRO H:125 , ALA H:128 , THR H:129 , HOH H:206 , HOH H:209
BINDING SITE FOR RESIDUE CYC H 202
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3dbja_ (A:)
1b: SCOP_d3dbjb_ (B:)
1c: SCOP_d3dbjc_ (C:)
1d: SCOP_d3dbjd_ (D:)
1e: SCOP_d3dbje_ (E:)
1f: SCOP_d3dbjf_ (F:)
1g: SCOP_d3dbjg_ (G:)
1h: SCOP_d3dbjh_ (H:)
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(
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Organisms
(
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Phycocyanin-like phycobilisome proteins
(65)
Protein domain
:
automated matches
(19)
Thermosynechococcus vulcanus [TaxId: 32053]
(1)
1a
d3dbja_
A:
1b
d3dbjb_
B:
1c
d3dbjc_
C:
1d
d3dbjd_
D:
1e
d3dbje_
E:
1f
d3dbjf_
F:
1g
d3dbjg_
G:
1h
d3dbjh_
H:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_3dbjB00 (B:1-174)
1b: CATH_3dbjD00 (D:1-174)
1c: CATH_3dbjF00 (F:1-174)
1d: CATH_3dbjH00 (H:1-174)
1e: CATH_3dbjA00 (A:3-174)
1f: CATH_3dbjC00 (C:3-174)
1g: CATH_3dbjE00 (E:3-174)
1h: CATH_3dbjG00 (G:3-174)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Phycocyanins
(32)
Thermosynechococcus vulcanus. Organism_taxid: 32053.
(2)
1a
3dbjB00
B:1-174
1b
3dbjD00
D:1-174
1c
3dbjF00
F:1-174
1d
3dbjH00
H:1-174
1e
3dbjA00
A:3-174
1f
3dbjC00
C:3-174
1g
3dbjE00
E:3-174
1h
3dbjG00
G:3-174
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Pfam Domains
(0, 0)
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Asym.Unit (219 KB)
Header - Asym.Unit
Biol.Unit 1 (159 KB)
Header - Biol.Unit 1
Biol.Unit 2 (161 KB)
Header - Biol.Unit 2
Biol.Unit 3 (160 KB)
Header - Biol.Unit 3
Biol.Unit 4 (161 KB)
Header - Biol.Unit 4
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