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Asym. Unit
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Asym.Unit (91 KB)
Biol.Unit 1 (86 KB)
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(1)
Title
:
STRUCTURE OF THE ACTIN-DEPOLYMERIZING FACTOR HOMOLOGY DOMAIN IN COMPLEX WITH ACTIN
Authors
:
V. O. Paavilainen, E. Oksanen, A. Goldman, P. Lappalainen
Date
:
30 May 08 (Deposition) - 29 Jul 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Actin Depolymerisation, Actin Binding Proteins, Cytoskeleton, Structural Protein/Contractile Protein Complex, Structural Protein/Structural Protein Regulator Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. O. Paavilainen, E. Oksanen, A. Goldman, P. Lappalainen
Structure Of The Actin-Depolymerizing Factor Homology Domain In Complex With Actin
J. Cell Biol. V. 182 51 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: CALCIUM ION (CAa)
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No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CA
1
Ligand/Ion
CALCIUM ION
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Sites
(1, 1)
Info
All Sites
1: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
GLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:158 , GLY A:182 , LYS A:213 , GLU A:214 , GLY A:301 , GLY A:302 , THR A:303 , MET A:305 , TYR A:306 , LYS A:336
BINDING SITE FOR RESIDUE ATP A 377
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
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1: ACTINS_1 (A:53-63)
2: ACTINS_ACT_LIKE (A:104-116)
3: ACTINS_2 (A:356-364)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
1
A:53-63
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
1
A:104-116
3
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
1
A:356-364
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d3dawb_ (B:)
2a: SCOP_d3dawa1 (A:4-146)
2b: SCOP_d3dawa2 (A:147-375)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Gelsolin-like
(96)
Superfamily
:
Actin depolymerizing proteins
(88)
Family
:
automated matches
(13)
Protein domain
:
automated matches
(13)
Mouse (Mus musculus) [TaxId: 10090]
(2)
1a
d3dawb_
B:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
Actin
(69)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(55)
2a
d3dawa1
A:4-146
2b
d3dawa2
A:147-375
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_3dawA01 (A:6-34,A:71-134,A:337-373)
1b: CATH_3dawA03 (A:136-181,A:271-332)
2a: CATH_3dawA04 (A:182-267)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
European rabbit,japanese white rabbit, domesticrabbit,rabbits (Oryctolagus cuniculus)
(1)
1a
3dawA01
A:6-34,A:71-134,A:337-373
1b
3dawA03
A:136-181,A:271-332
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
European rabbit,japanese white rabbit, domesticrabbit,rabbits (Oryctolagus cuniculus)
(1)
2a
3dawA04
A:182-267
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Pfam Domains
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