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3DAH
Asym. Unit
Info
Asym.Unit (145 KB)
Biol.Unit 1 (139 KB)
Biol.Unit 2 (274 KB)
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(1)
Title
:
2.3 A CRYSTAL STRUCTURE OF RIBOSE-PHOSPHATE PYROPHOSPHOKINASE FROM BURKHOLDERIA PSEUDOMALLEI
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
29 May 08 (Deposition) - 10 Jun 08 (Release) - 30 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A,B,C (2x)
Keywords
:
Burkholderia, Pseudomallei, Ribose, Phosphate, Pyrophosphokinase, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Magnesium, Metal Binding, Nucleotide Biosynthesis, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Baugh, L. A. Gallagher, R. Patrapuvich, M. C. Clifton, A. S. Gardberg, T. E. Edwards, B. Armour, D. W. Begley, S. H. Dieterich, D. M. Dranow, J. Abendroth, J. W. Fairman, D. Fox, B. L. Staker, I. Phan, A. Gillespie, R. Choi, S. Nakazawa-Hewitt, M. T. Nguyen, A. Napuli, L. Barrett, G. W. Buchko, R. Stacy, P. J. Myler, L. J. Stewart, C. Manoil W. C. Van Voorhis
Combining Functional And Structural Genomics To Sample The Essential Burkholderia Structome.
Plos One V. 8 53851 2013
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
1c: ADENOSINE MONOPHOSPHATE (AMPc)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
2e: PHOSPHATE ION (PO4e)
2f: PHOSPHATE ION (PO4f)
2g: PHOSPHATE ION (PO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
3
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
PO4
7
Ligand/Ion
PHOSPHATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:50 , ARG A:52 , ARG A:108 , SER B:310 , MET B:312
BINDING SITE FOR RESIDUE PO4 B 319
02
AC2
SOFTWARE
SER A:310 , MET A:312 , ARG B:108 , ASN C:50 , ARG C:52
BINDING SITE FOR RESIDUE PO4 A 319
03
AC3
SOFTWARE
ASP B:226 , THR B:227 , ALA B:228 , GLY B:229 , THR B:230
BINDING SITE FOR RESIDUE PO4 B 320
04
AC4
SOFTWARE
ASP A:226 , THR A:227 , ALA A:228 , GLY A:229 , THR A:230
BINDING SITE FOR RESIDUE PO4 A 320
05
AC5
SOFTWARE
ASP C:226 , THR C:227 , ALA C:228 , GLY C:229 , THR C:230
BINDING SITE FOR RESIDUE PO4 C 319
06
AC6
SOFTWARE
ARG B:52 , ARG C:108 , ARG C:304
BINDING SITE FOR RESIDUE PO4 B 321
07
AC7
SOFTWARE
GLU B:49 , ASN B:50 , ARG B:262 , ARG C:108
BINDING SITE FOR RESIDUE PO4 B 322
08
AC8
SOFTWARE
PHE A:38 , ASP A:40 , GLU A:42 , ARG A:99 , GLN A:100 , HIS A:134
BINDING SITE FOR RESIDUE AMP A 401
09
AC9
SOFTWARE
PHE B:38 , ASP B:40 , GLU B:42 , ARG C:99 , GLN C:100 , ARG C:102 , PRO C:104 , HIS C:134
BINDING SITE FOR RESIDUE AMP B 401
10
BC1
SOFTWARE
ARG B:99 , GLN B:100 , ARG B:102 , HIS B:134 , PHE C:38 , ASP C:40 , GLU C:42
BINDING SITE FOR RESIDUE AMP B 402
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3daha1 (A:5-165)
1b: SCOP_d3daha2 (A:166-314)
1c: SCOP_d3dahb1 (B:5-165)
1d: SCOP_d3dahb2 (B:166-315)
1e: SCOP_d3dahc1 (C:6-165)
1f: SCOP_d3dahc2 (C:166-312)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PRTase-like
(145)
Superfamily
:
PRTase-like
(145)
Family
:
automated matches
(39)
Protein domain
:
automated matches
(39)
Burkholderia pseudomallei [TaxId: 320372]
(1)
1a
d3daha1
A:5-165
1b
d3daha2
A:166-314
1c
d3dahb1
B:5-165
1d
d3dahb2
B:166-315
1e
d3dahc1
C:6-165
1f
d3dahc2
C:166-312
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_3dahB01 (B:5-150,B:293-315)
1b: CATH_3dahA01 (A:5-150,A:293-314)
1c: CATH_3dahC01 (C:6-150,C:293-312)
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Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2020, no name defined]
(117)
Burkholderia pseudomallei 1710b. Organism_taxid: 320372. Strain: 1710b.
(1)
1a
3dahB01
B:5-150,B:293-315
1b
3dahA01
A:5-150,A:293-314
1c
3dahC01
C:6-150,C:293-312
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (145 KB)
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