PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3D9U
Asym. Unit
Info
Asym.Unit (23 KB)
Biol.Unit 1 (19 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
THE BIR3 DOMAIN OF CIAP1 IN COMPLEX WITH THE N TERMINAL PEPTIDE FROM SMAC/DIABLO (AVPIAQ).
Authors
:
R. Kulathila, A. Price
Date
:
27 May 08 (Deposition) - 10 Jun 08 (Release) - 10 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Zinc Finger, Apoptosis, Cytoplasm, Metal-Binding, Polymorphism, Zinc, Zinc-Finger
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Kulathila, B. Vash, D. Sage, S. Cornell-Kennon, K. Wright, J. Koehn, T. Stams, K. Clark, A. Price
The Structure Of The Bir3 Domain Of Ciap1 In Complex With The N-Terminal Peptides Of Smac And Caspase-9.
Acta Crystallogr. , Sect. D V. 65 58 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:300 , CYS A:303 , HIS A:320 , CYS A:327
BINDING SITE FOR RESIDUE ZN A 501
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: BIR_REPEAT_1 (-|-|A:263-330)
2: BIR_REPEAT_2 (-|-|A:266-331)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BIR_REPEAT_1
PS01282
BIR repeat.
BIRC2_HUMAN
46-113
184-250
269-336
1
-
-
A:263-330
2
BIR_REPEAT_2
PS50143
BIR repeat profile.
BIRC2_HUMAN
49-114
187-251
272-337
1
-
-
A:266-331
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.3d (A:254-293)
Exon 1.4 (A:293-326)
Exon 1.5b (A:326-345)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1e/1.3d
2: Boundary 1.3d/1.4
3: Boundary 1.4/1.5b
4: Boundary 1.5b/1.6b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1e
ENST00000227758
1e
ENSE00001373030
chr11:
102217966-102218107
142
BIRC2_HUMAN
-
0
0
-
-
1.3d
ENST00000227758
3d
ENSE00002190786
chr11:
102219329-102221480
2152
BIRC2_HUMAN
1-299
299
1
A:254-293
40
1.4
ENST00000227758
4
ENSE00001789805
chr11:
102221575-102221674
100
BIRC2_HUMAN
299-332
34
1
A:293-326
34
1.5b
ENST00000227758
5b
ENSE00000930289
chr11:
102233627-102233705
79
BIRC2_HUMAN
332-358
27
1
A:326-345
20
1.6b
ENST00000227758
6b
ENSE00000930290
chr11:
102234399-102234447
49
BIRC2_HUMAN
359-375
17
0
-
-
1.7
ENST00000227758
7
ENSE00000930291
chr11:
102239037-102239279
243
BIRC2_HUMAN
375-456
82
0
-
-
1.8c
ENST00000227758
8c
ENSE00000930292
chr11:
102248227-102248481
255
BIRC2_HUMAN
456-541
86
0
-
-
1.9
ENST00000227758
9
ENSE00001656578
chr11:
102248588-102248629
42
BIRC2_HUMAN
541-555
15
0
-
-
1.10d
ENST00000227758
10d
ENSE00002160883
chr11:
102248721-102249401
681
BIRC2_HUMAN
555-618
64
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3d9ua1 (A:260-345)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Inhibitor of apoptosis (IAP) repeat
(71)
Superfamily
:
Inhibitor of apoptosis (IAP) repeat
(71)
Family
:
Inhibitor of apoptosis (IAP) repeat
(70)
Protein domain
:
2MIHB/C-IAP-1
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3d9ua1
A:260-345
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (23 KB)
Header - Asym.Unit
Biol.Unit 1 (19 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3D9U
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help