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3D9M
Biol. Unit 1
Info
Asym.Unit (59 KB)
Biol.Unit 1 (29 KB)
Biol.Unit 2 (27 KB)
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(1)
Title
:
SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA-POLYMERASE II
Authors
:
R. Becker, B. Loll, A. Meinhart
Date
:
27 May 08 (Deposition) - 10 Jun 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,Y,Z
Biol. Unit 1: B,Z (1x)
Biol. Unit 2: A,Y (1x)
Keywords
:
Scaf8, Rna Polymerase Ii Ctd Interacting Domain, Arm Repeats, Phospho-Ctd, Phosphoprotein, Rna-Binding, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Becker, B. Loll, A. Meinhart
Snapshots Of The Rna Processing Factor Scaf8 Bound To Different Phosphorylated Forms Of The Carboxyl-Terminal Domain Of Rna Polymerase Ii.
J. Biol. Chem. V. 283 22659 2008
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: AMMONIUM ION (NH4a)
1b: AMMONIUM ION (NH4b)
2a: PHOSPHOSERINE (SEPa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
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No.
Name
Count
Type
Full Name
1
NH4
1
Ligand/Ion
AMMONIUM ION
2
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
3
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC7 (SOFTWARE)
5: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ILE B:37 , SER B:73 , PHE B:77 , ASP B:82
BINDING SITE FOR RESIDUE NH4 B 401
2
AC5
SOFTWARE
LYS B:41 , ARG B:87
BINDING SITE FOR RESIDUE SO4 B 504
3
AC6
SOFTWARE
ARG B:71 , PRO Z:6 , SER Z:7
BINDING SITE FOR RESIDUE SO4 B 506
4
AC7
SOFTWARE
ARG A:71 , LEU A:116 , ASN A:120 , HIS B:140
BINDING SITE FOR RESIDUE SO4 A 507
5
AC9
SOFTWARE
TYR B:40 , LYS B:41 , ARG B:87 , ASN B:90
BINDING SITE FOR RESIDUE SO4 B 509
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CID (B:1-136)
2: RNA_POL_II_REPEAT ()
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CID
PS51391
CID domain profile.
SCAF8_HUMAN
1-139
1
B:1-136
2
RNA_POL_II_REPEAT
PS00115
Eukaryotic RNA polymerase II heptapeptide repeat.
RPB1_HUMAN
1593-1599
1615-1621
1622-1628
1629-1635
1636-1642
1643-1649
1650-1656
1657-1663
1664-1670
1671-1677
1678-1684
1685-1691
1692-1698
1699-1705
1706-1712
1713-1719
1720-1726
1727-1733
1734-1740
1741-1747
1748-1754
1755-1761
1762-1768
1769-1775
1776-1782
1783-1789
1790-1796
1797-1803
1818-1824
1825-1831
1839-1845
1853-1859
1860-1866
1867-1873
1874-1880
1888-1894
1902-1908
1909-1915
1916-1922
1923-1929
1930-1936
1947-1953
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
Z:1-7
-
-
-
-
-
-
-
-
-
-
-
-
-
-
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (59 KB)
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