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3D9L
Biol. Unit 1
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Asym.Unit (57 KB)
Biol.Unit 1 (27 KB)
Biol.Unit 2 (27 KB)
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(1)
Title
:
SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA-POLYMERASE II
Authors
:
R. Becker, B. Loll, A. Meinhart
Date
:
27 May 08 (Deposition) - 10 Jun 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,Y,Z
Biol. Unit 1: A,Y (1x)
Biol. Unit 2: B,Z (1x)
Keywords
:
Scaf8, Rna Polymerase Ii Ctd Interacting Domain, Arm Repeats, Phospho-Ctd, Phosphoprotein, Rna-Binding, Transcription-Peptide Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
R. Becker, B. Loll, A. Meinhart
Snapshots Of The Rna Processing Factor Scaf8 Bound To Different Phosphorylated Forms Of The Carboxyl-Terminal Domain Of Rna Polymerase Ii.
J. Biol. Chem. V. 283 22659 2008
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: BIOTIN (BTNa)
3a: GLYCEROL (GOLa)
4a: PHOSPHOSERINE (SEPa)
4b: PHOSPHOSERINE (SEPb)
4c: PHOSPHOSERINE (SEPc)
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No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
BTN
1
Mod. Amino Acid
BIOTIN
3
GOL
-1
Ligand/Ion
GLYCEROL
4
SEP
2
Mod. Amino Acid
PHOSPHOSERINE
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Sites
(2, 2)
Info
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1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:20 , ILE A:21 , PRO A:61 , TYR A:64 , HOH A:502 , TYR Y:1
BINDING SITE FOR RESIDUE ACT A 501
2
AC3
SOFTWARE
PRO A:20 , ILE A:21 , LYS A:23 , MET A:26 , LYS A:31 , TYR A:64 , ASP A:67 , SER A:68 , ARG A:71 , GLN A:72 , HIS A:75 , GLN A:76 , GLN A:97 , TYR A:100 , ARG A:101 , ARG A:112 , LEU A:138 , ACT A:501 , HOH A:517 , SER B:9 , GLU B:10 , SER B:13 , HOH Y:65 , HOH Y:109
BINDING SITE FOR CHAIN Y OF CTD-PEPTIDE
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 2)
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2: RNA_POL_II_REPEAT ()
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CID
PS51391
CID domain profile.
SCAF8_HUMAN
1-139
0
-
2
RNA_POL_II_REPEAT
PS00115
Eukaryotic RNA polymerase II heptapeptide repeat.
RPB1_HUMAN
1593-1599
1615-1621
1622-1628
1629-1635
1636-1642
1643-1649
1650-1656
1657-1663
1664-1670
1671-1677
1678-1684
1685-1691
1692-1698
1699-1705
1706-1712
1713-1719
1720-1726
1727-1733
1734-1740
1741-1747
1748-1754
1755-1761
1762-1768
1769-1775
1776-1782
1783-1789
1790-1796
1797-1803
1818-1824
1825-1831
1839-1845
1853-1859
1860-1866
1867-1873
1874-1880
1888-1894
1902-1908
1909-1915
1916-1922
1923-1929
1930-1936
1947-1953
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
Y:1-7
Y:8-10
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
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Exons
(0, 0)
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SCOP Domains
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Asym.Unit (57 KB)
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