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Asym. Unit
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Asym.Unit (58 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (27 KB)
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(1)
Title
:
SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA-POLYMERASE II
Authors
:
R. Becker, B. Loll, A. Meinhart
Date
:
27 May 08 (Deposition) - 10 Jun 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,Y,Z
Biol. Unit 1: B,Z (1x)
Biol. Unit 2: A,Y (1x)
Keywords
:
Scaf8, Rna Polymerase Ii Ctd Interacting Domain, Arm Repeats, Phospho-Ctd, Phosphoprotein, Rna-Binding, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
R. Becker, B. Loll, A. Meinhart
Snapshots Of The Rna Processing Factor Scaf8 Bound To Different Phosphorylated Forms Of The Carboxyl-Terminal Domain Of Rna Polymerase Ii.
J. Biol. Chem. V. 283 22659 2008
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: PHOSPHOSERINE (SEPa)
1b: PHOSPHOSERINE (SEPb)
1c: PHOSPHOSERINE (SEPc)
1d: PHOSPHOSERINE (SEPd)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SEP
4
Mod. Amino Acid
PHOSPHOSERINE
2
SO4
9
Ligand/Ion
SULFATE ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:40 , LYS A:41 , ARG A:87 , ASN A:90
BINDING SITE FOR RESIDUE SO4 A 1001
2
AC2
SOFTWARE
TYR B:40 , ARG B:87 , ASN B:90
BINDING SITE FOR RESIDUE SO4 B 1002
3
AC3
SOFTWARE
LYS A:41 , ARG A:87
BINDING SITE FOR RESIDUE SO4 A 1003
4
AC4
SOFTWARE
ARG A:71 , LEU A:116 , ASN A:120 , HIS B:140
BINDING SITE FOR RESIDUE SO4 A 1004
5
AC5
SOFTWARE
ARG B:71 , PRO Z:6 , SER Z:7
BINDING SITE FOR RESIDUE SO4 Z 1006
6
AC6
SOFTWARE
LYS A:81 , PRO B:20 , TYR B:64 , LYS B:109
BINDING SITE FOR RESIDUE SO4 B 1007
7
AC7
SOFTWARE
GLY A:78 , GLN A:79
BINDING SITE FOR RESIDUE SO4 A 1008
8
AC8
SOFTWARE
LYS A:124 , SER A:125
BINDING SITE FOR RESIDUE SO4 A 1010
9
AC9
SOFTWARE
LYS B:41 , ARG B:87
BINDING SITE FOR RESIDUE SO4 B 1012
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: CID (B:1-136)
2: RNA_POL_II_REPEAT (-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CID
PS51391
CID domain profile.
SCAF8_HUMAN
1-139
1
B:1-136
2
RNA_POL_II_REPEAT
PS00115
Eukaryotic RNA polymerase II heptapeptide repeat.
RPB1_HUMAN
1593-1599
1615-1621
1622-1628
1629-1635
1636-1642
1643-1649
1650-1656
1657-1663
1664-1670
1671-1677
1678-1684
1685-1691
1692-1698
1699-1705
1706-1712
1713-1719
1720-1726
1727-1733
1734-1740
1741-1747
1748-1754
1755-1761
1762-1768
1769-1775
1776-1782
1783-1789
1790-1796
1797-1803
1818-1824
1825-1831
1839-1845
1853-1859
1860-1866
1867-1873
1874-1880
1888-1894
1902-1908
1909-1915
1916-1922
1923-1929
1930-1936
1947-1953
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
Y:1-4
Z:1-7
-
-
-
-
-
-
-
-
-
-
-
-
-
-
[
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]
Exons
(5, 10)
Info
All Exons
Exon 1.1a (A:2-10 | B:1-10)
Exon 1.3 (A:11-38 | B:11-38)
Exon 1.4 (A:39-53 | B:39-53)
Exon 1.5 (A:54-107 | B:54-107)
Exon 1.6c (A:108-138 | B:108-141)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6c
6: Boundary 1.6c/1.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367178
1a
ENSE00001428900
chr6:
155054459-155055064
606
SCAF8_HUMAN
1-10
10
2
A:2-10
B:1-10
9
10
1.3
ENST00000367178
3
ENSE00002165709
chr6:
155095123-155095206
84
SCAF8_HUMAN
11-38
28
2
A:11-38
B:11-38
28
28
1.4
ENST00000367178
4
ENSE00002190306
chr6:
155099135-155099179
45
SCAF8_HUMAN
39-53
15
2
A:39-53
B:39-53
15
15
1.5
ENST00000367178
5
ENSE00002183742
chr6:
155108995-155109156
162
SCAF8_HUMAN
54-107
54
2
A:54-107
B:54-107
54
54
1.6c
ENST00000367178
6c
ENSE00001237781
chr6:
155113957-155114110
154
SCAF8_HUMAN
108-159
52
2
A:108-138
B:108-141
31
34
1.7
ENST00000367178
7
ENSE00000813828
chr6:
155116143-155116273
131
SCAF8_HUMAN
159-202
44
0
-
-
1.8
ENST00000367178
8
ENSE00001237766
chr6:
155123105-155123281
177
SCAF8_HUMAN
203-261
59
0
-
-
1.9
ENST00000367178
9
ENSE00000813830
chr6:
155124678-155124757
80
SCAF8_HUMAN
262-288
27
0
-
-
1.10
ENST00000367178
10
ENSE00000813831
chr6:
155126503-155126620
118
SCAF8_HUMAN
288-327
40
0
-
-
1.11
ENST00000367178
11
ENSE00001237750
chr6:
155129204-155129335
132
SCAF8_HUMAN
328-371
44
0
-
-
1.12
ENST00000367178
12
ENSE00000813833
chr6:
155129820-155129932
113
SCAF8_HUMAN
372-409
38
0
-
-
1.13
ENST00000367178
13
ENSE00001237733
chr6:
155131149-155131342
194
SCAF8_HUMAN
409-474
66
0
-
-
1.14
ENST00000367178
14
ENSE00001375840
chr6:
155136850-155136950
101
SCAF8_HUMAN
474-507
34
0
-
-
1.15
ENST00000367178
15
ENSE00001190014
chr6:
155139613-155139726
114
SCAF8_HUMAN
508-545
38
0
-
-
1.16
ENST00000367178
16
ENSE00001237706
chr6:
155141311-155141467
157
SCAF8_HUMAN
546-598
53
0
-
-
1.17b
ENST00000367178
17b
ENSE00001237697
chr6:
155143410-155143543
134
SCAF8_HUMAN
598-642
45
0
-
-
1.18
ENST00000367178
18
ENSE00000813840
chr6:
155145368-155145512
145
SCAF8_HUMAN
643-691
49
0
-
-
1.20
ENST00000367178
20
ENSE00001237676
chr6:
155148306-155148374
69
SCAF8_HUMAN
691-714
24
0
-
-
1.21
ENST00000367178
21
ENSE00000813842
chr6:
155152056-155152274
219
SCAF8_HUMAN
714-787
74
0
-
-
1.22b
ENST00000367178
22b
ENSE00001812832
chr6:
155153073-155155192
2120
SCAF8_HUMAN
787-1271
485
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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all PFAM domains
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Sorry, no Info available
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