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3D90
Asym. Unit
Info
Asym.Unit (94 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (45 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN PROGESTERONE RECEPTOR LIGAND-BINDING DOMAIN BOUND TO LEVONORGESTREL
Authors
:
I. Petit-Topin, N. Turque, A. Ulman, E. Gainer, M. E. Rafestin-Oblin, J. Fagart
Date
:
26 May 08 (Deposition) - 26 May 09 (Release) - 02 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.26
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Progesterone Receptor, Steroid Receptor, Nuclear Receptor, Transcription Factor, Women Health, Contraception, Alternative Splicing, Dna-Binding, Lipid-Binding, Metal- Binding, Nucleus, Phosphoprotein, Polymorphism, Receptor, Steroid-Binding, Transcription, Transcription Regulation, Zinc, Zinc-Finger
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Petit-Topin, N. Turque, J. Fagart, M. Fay, A. Ulmann, E. Gainer, M. E. Rafestin-Oblin
Met909 Plays A Key Role In The Activation Of The Progesterone Receptor And Also In The High Potency Of 13-Ethyl Progestins
Mol. Pharmacol. V. 75 1317 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 13-BETA-ETHYL-17-ALPHA-ETHYNYL-17-... (NOGa)
1b: 13-BETA-ETHYL-17-ALPHA-ETHYNYL-17-... (NOGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NOG
2
Ligand/Ion
13-BETA-ETHYL-17-ALPHA-ETHYNYL-17-BETA-HYDROXYGON-4-EN-3-ONE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:715 , LEU A:718 , ASN A:719 , LEU A:721 , GLN A:725 , MET A:759 , ARG A:766 , LEU A:887 , TYR A:890 , CYS A:891
BINDING SITE FOR RESIDUE NOG A 1001
2
AC2
SOFTWARE
LEU B:715 , LEU B:718 , ASN B:719 , LEU B:721 , GLN B:725 , MET B:759 , ARG B:766 , LEU B:887 , CYS B:891 , PHE B:905
BINDING SITE FOR RESIDUE NOG B 2001
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014628 (S865L, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014628
S
865
L
PRGR_HUMAN
Polymorphism
2020880
A/B
S
865
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(5, 10)
Info
All Exons
Exon 1.4b (A:682-738 (gaps) | B:683-738)
Exon 1.5a (A:738-786 | B:738-786)
Exon 1.6a (A:786-830 | B:786-830)
Exon 1.7a (A:830-882 (gaps) | B:830-882 (gaps...)
Exon 1.8d (A:883-931 | B:883-932)
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All Exon Boundaries
1: Boundary 1.3/1.4b
2: Boundary 1.4b/1.5a
3: Boundary 1.5a/1.6a
4: Boundary 1.6a/1.7a
5: Boundary 1.7a/1.8d
6: Boundary 1.8d/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000325455
1a
ENSE00001204729
chr11:
101001255-100998165
3091
PRGR_HUMAN
1-546
546
0
-
-
1.2
ENST00000325455
2
ENSE00000989714
chr11:
100996889-100996738
152
PRGR_HUMAN
546-597
52
0
-
-
1.3
ENST00000325455
3
ENSE00000745002
chr11:
100962607-100962491
117
PRGR_HUMAN
597-636
40
0
-
-
1.4b
ENST00000325455
4b
ENSE00000795216
chr11:
100933483-100933178
306
PRGR_HUMAN
636-738
103
2
A:682-738 (gaps)
B:683-738
57
56
1.5a
ENST00000325455
5a
ENSE00000989716
chr11:
100922299-100922155
145
PRGR_HUMAN
738-786
49
2
A:738-786
B:738-786
49
49
1.6a
ENST00000325455
6a
ENSE00000989717
chr11:
100920790-100920660
131
PRGR_HUMAN
786-830
45
2
A:786-830
B:786-830
45
45
1.7a
ENST00000325455
7a
ENSE00000795215
chr11:
100912833-100912676
158
PRGR_HUMAN
830-882
53
2
A:830-882 (gaps)
B:830-882 (gaps)
53
53
1.8d
ENST00000325455
8d
ENSE00001350778
chr11:
100910002-100900355
9648
PRGR_HUMAN
883-933
51
2
A:883-931
B:883-932
49
50
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3d90a_ (A:)
1b: SCOP_d3d90b_ (B:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Progesterone receptor
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d3d90a_
A:
1b
d3d90b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3d90A00 (A:682-931)
1b: CATH_3d90B00 (B:683-932)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
3d90A00
A:682-931
1b
3d90B00
B:683-932
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Pfam Domains
(0, 0)
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all PFAM domains
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Show PDB file:
Asym.Unit (94 KB)
Header - Asym.Unit
Biol.Unit 1 (46 KB)
Header - Biol.Unit 1
Biol.Unit 2 (45 KB)
Header - Biol.Unit 2
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