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Getting 'Exon' information from database.
3D8D
Asym. Unit
Info
Asym.Unit (53 KB)
Biol.Unit 1 (25 KB)
Biol.Unit 2 (25 KB)
Biol.Unit 3 (48 KB)
Biol.Unit 4 (48 KB)
Biol.Unit 5 (48 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN FE65-PTB1 DOMAIN
Authors
:
J. Radzimanowski, S. Ravaud, I. Sinning, K. Wild
Date
:
23 May 08 (Deposition) - 10 Jun 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: A,B (1x)
Biol. Unit 5: A,B (1x)
Keywords
:
Alpha-Beta Structure, Phosphotyrosine Binding Domain, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Radzimanowski, S. Ravaud, S. Schlesinger, J. Koch, K. Beyreuther, I. Sinning, K. Wild
Crystal Structure Of The Human Fe65-Ptb1 Domain.
J. Biol. Chem. V. 283 23113 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
2a: MERCURY (II) ION (HGa)
2b: MERCURY (II) ION (HGb)
2c: MERCURY (II) ION (HGc)
2d: MERCURY (II) ION (HGd)
2e: MERCURY (II) ION (HGe)
2f: MERCURY (II) ION (HGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
2
HG
6
Ligand/Ion
MERCURY (II) ION
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:369 , LEU B:423
BINDING SITE FOR RESIDUE HG A 1
2
AC2
SOFTWARE
CYS A:369 , CYS B:369
BINDING SITE FOR RESIDUE HG B 2
3
AC3
SOFTWARE
MET B:380 , ALA B:393 , CYS B:397 , CYS B:479
BINDING SITE FOR RESIDUE HG B 3
4
AC4
SOFTWARE
ASN A:407 , CYS B:499
BINDING SITE FOR RESIDUE HG B 4
5
AC5
SOFTWARE
MET A:380 , ALA A:393 , CYS A:397 , CYS A:479
BINDING SITE FOR RESIDUE HG A 5
6
AC6
SOFTWARE
CYS A:499 , ASN B:407
BINDING SITE FOR RESIDUE HG A 6
7
AC7
SOFTWARE
HIS A:443 , ALA A:444
BINDING SITE FOR RESIDUE EDO A 514
[
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]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014445 (N396S, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014445
N
396
S
APBB1_HUMAN
Polymorphism
1800425
A/B
N
396
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PID (-|A:370-505,B:370-505)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PID
PS01179
Phosphotyrosine interaction domain (PID) profile.
APBB1_HUMAN
542-699
370-509
2
-
A:370-505
B:370-505
[
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]
Exons
(5, 10)
Info
All Exons
Exon 1.10 (A:366-368 | B:366-368)
Exon 1.11c (A:369-418 | B:369-418)
Exon 1.11e (A:419-459 | B:419-459)
Exon 1.12b (A:462-501 | B:462-501)
Exon 1.12j (A:502-506 | B:502-506)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.9/1.10
2: Boundary 1.10/1.11c
3: Boundary 1.11c/1.11e
4: Boundary 1.11e/1.12b
5: Boundary 1.12b/1.12j
6: Boundary 1.12j/1.12l
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000389906
2b
ENSE00001526385
chr11:
6440300-6440215
86
APBB1_HUMAN
-
0
0
-
-
1.3b
ENST00000389906
3b
ENSE00001291677
chr11:
6432591-6431857
735
APBB1_HUMAN
1-241
241
0
-
-
1.7c
ENST00000389906
7c
ENSE00001102023
chr11:
6425052-6424877
176
APBB1_HUMAN
241-299
59
0
-
-
1.8
ENST00000389906
8
ENSE00001102020
chr11:
6424774-6424718
57
APBB1_HUMAN
300-318
19
0
-
-
1.9
ENST00000389906
9
ENSE00001101992
chr11:
6424634-6424549
86
APBB1_HUMAN
319-347
29
0
-
-
1.10
ENST00000389906
10
ENSE00001101995
chr11:
6424438-6424375
64
APBB1_HUMAN
347-368
22
2
A:366-368
B:366-368
3
3
1.11c
ENST00000389906
11c
ENSE00001102016
chr11:
6423955-6423806
150
APBB1_HUMAN
369-418
50
2
A:369-418
B:369-418
50
50
1.11e
ENST00000389906
11e
ENSE00001101999
chr11:
6423439-6423312
128
APBB1_HUMAN
419-461
43
2
A:419-459
B:419-459
41
41
1.12b
ENST00000389906
12b
ENSE00001102005
chr11:
6422924-6422804
121
APBB1_HUMAN
461-501
41
2
A:462-501
B:462-501
40
40
1.12j
ENST00000389906
12j
ENSE00001101974
chr11:
6422659-6422575
85
APBB1_HUMAN
502-530
29
2
A:502-506
B:502-506
5
5
1.12l
ENST00000389906
12l
ENSE00001102013
chr11:
6422302-6422219
84
APBB1_HUMAN
530-558
29
0
-
-
1.14c
ENST00000389906
14c
ENSE00001101981
chr11:
6417445-6417330
116
APBB1_HUMAN
558-596
39
0
-
-
1.14d
ENST00000389906
14d
ENSE00001101989
chr11:
6417192-6417016
177
APBB1_HUMAN
597-655
59
0
-
-
1.14i
ENST00000389906
14i
ENSE00001301318
chr11:
6416931-6416355
577
APBB1_HUMAN
656-710
55
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Show PDB file:
Asym.Unit (53 KB)
Header - Asym.Unit
Biol.Unit 1 (25 KB)
Header - Biol.Unit 1
Biol.Unit 2 (25 KB)
Header - Biol.Unit 2
Biol.Unit 3 (48 KB)
Header - Biol.Unit 3
Biol.Unit 4 (48 KB)
Header - Biol.Unit 4
Biol.Unit 5 (48 KB)
Header - Biol.Unit 5
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