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3D7H
Biol. Unit 1
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Asym.Unit (141 KB)
Biol.Unit 1 (264 KB)
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(1)
Title
:
A HIGH RESOLUTION CRYSTAL STRUCTURE OF HUMAN GLUTAMATE CARBOXYPEPTIDASE II (GCPII) IN A COMPLEX WITH DCIBZL, A UREA-BASED INHIBITOR
Authors
:
J. Lubkowski, C. Barinka
Date
:
21 May 08 (Deposition) - 30 Dec 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Prostate Specific Membrane Antigen (Psma); Metallopeptidase; Folate Hydrolase; Glutamate Carboxypeptidase Ii; Naaladase, Dcibzl, Urea- Based Inhibitor, Carboxypeptidase, Dipeptidase, Glycoprotein, Hydrolase, Membrane, Metal-Binding, Metalloprotease, Multifunctional Enzyme, Protease, Signal-Anchor, Transmembrane
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
C. Barinka, Y. Byun, C. L. Dusich, S. R. Banerjee, Y. Chen, M. Castanares, A. P. Kozikowski, R. C. Mease, M. G. Pomper, J. Lubkowsk
Interactions Between Human Glutamate Carboxypeptidase Ii An Urea-Based Inhibitors: Structural Characterization
J. Med. Chem. V. 51 7737 2008
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Hetero Components
(4, 30)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CALCIUM ION (CAa)
3a: CHLORIDE ION (CLa)
4a: ALPHA-D-MANNOSE (MANa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6a: N-{[(1S)-1-CARBOXY-5-{[(4-IODOPHEN... (YC2a)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
View:
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No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
22
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
YC2
2
Ligand/Ion
N-{[(1S)-1-CARBOXY-5-{[(4-IODOPHENYL)CARBONYL]AMINO}PENTYL]CARBAMOYL}-L-GLUTAMIC ACID
7
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:651
BINDING SITE FOR RESIDUE BMA A 1768
2
AC2
SOFTWARE
HIS A:112 , GLU A:276 , LYS A:324 , ARG A:354
BINDING SITE FOR RESIDUE BMA A 1765
3
AC3
SOFTWARE
ASP A:387 , GLU A:425 , HIS A:553 , HOH A:2257
BINDING SITE FOR RESIDUE ZN A 1751
4
AC4
SOFTWARE
HIS A:377 , ASP A:387 , GLU A:424 , GLU A:425 , ASP A:453 , HOH A:2257
BINDING SITE FOR RESIDUE ZN A 1752
5
AC5
SOFTWARE
THR A:269 , TYR A:272 , GLU A:433 , GLU A:436 , HOH A:1773
BINDING SITE FOR RESIDUE CA A 1753
6
AC6
SOFTWARE
ASN A:451 , ASP A:453 , ARG A:534 , ARG A:536
BINDING SITE FOR RESIDUE CL A 1754
7
AC7
SOFTWARE
ARG A:210 , ASN A:257 , GLU A:424 , GLU A:425 , GLY A:427 , LEU A:428 , ARG A:463 , ASP A:465 , GLY A:518 , ASN A:519 , ARG A:534 , ARG A:536 , PHE A:546 , TYR A:552 , HIS A:553 , LYS A:699 , TYR A:700 , HOH A:1776 , HOH A:1937 , HOH A:1941 , HOH A:2012 , HOH A:2257 , HOH A:2258 , HOH A:2270
BINDING SITE FOR RESIDUE YC2 A 1
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_024592 (Y75H, chain A, )
2: VAR_012736 (H475Y, chain A, )
3: VAR_028882 (V627L, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024592
Y
75
H
FOLH1_HUMAN
Polymorphism
202676
A
Y
75
H
2
UniProt
VAR_012736
H
475
Y
FOLH1_HUMAN
Polymorphism
61886492
A
H
475
Y
3
UniProt
VAR_028882
V
627
L
FOLH1_HUMAN
Polymorphism
2988342
A
V
627
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (141 KB)
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Biol.Unit 1 (264 KB)
Header - Biol.Unit 1
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