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3D5R
Biol. Unit 2
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Asym.Unit (122 KB)
Biol.Unit 1 (60 KB)
Biol.Unit 2 (60 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EFB-C (N138A) / C3D COMPLEX
Authors
:
B. V. Geisbrecht
Date
:
16 May 08 (Deposition) - 09 Sep 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Protein-Protein Complex, Cell Adhesion/Toxin Complex, Site- Directed Mutation, Age-Related Macular Degeneration, Cleavage On Pair Of Basic Residues, Complement Alternate Pathway, Complement Pathway, Disease Mutation, Glycoprotein, Immune Response, Inflammatory Response, Innate Immunity, Phosphoprotein, Polymorphism, Secreted, Thioester Bond
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Haspel, D. Ricklin, B. V. Geisbrecht, L. E. Kavraki, J. D. Lambris
Electrostatic Contributions Drive The Interaction Between Staphylococcus Aureus Protein Efb-C And Its Complement Target C3D.
Protein Sci. V. 17 1894 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_063655 (R53L, chain B, )
2: VAR_063216 (A105V, chain B, )
3: VAR_063217 (D126N, chain B, )
4: VAR_063218 (C169W, chain B, )
5: VAR_063219 (Q172K, chain B, )
6: VAR_022761 (D227N, chain B, )
7: VAR_019207 (G235D, chain B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063655
R
1042
L
CO3_HUMAN
Disease (AHUS5)
---
B
R
53
L
2
UniProt
VAR_063216
A
1094
V
CO3_HUMAN
Disease (AHUS5)
---
B
A
105
V
3
UniProt
VAR_063217
D
1115
N
CO3_HUMAN
Disease (AHUS5)
---
B
D
126
N
4
UniProt
VAR_063218
C
1158
W
CO3_HUMAN
Disease (AHUS5)
---
B
C
169
W
5
UniProt
VAR_063219
Q
1161
K
CO3_HUMAN
Disease (AHUS5)
---
B
Q
172
K
6
UniProt
VAR_022761
D
1216
N
CO3_HUMAN
Unclassified
---
B
D
227
N
7
UniProt
VAR_019207
G
1224
D
CO3_HUMAN
Polymorphism
11569534
B
G
235
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ALPHA_2_MACROGLOBULIN (B:18-26)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALPHA_2_MACROGLOBULIN
PS00477
Alpha-2-macroglobulin family thiolester region signature.
CO3_HUMAN
1007-1015
1
-
B:18-26
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3d5ra_ (A:)
1b: SCOP_d3d5rb_ (B:)
2a: SCOP_d3d5rc1 (C:11-75)
2b: SCOP_d3d5rd_ (D:)
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Terpenoid cyclases/Protein prenyltransferases
(151)
Family
:
Complement components
(19)
Protein domain
:
Thio-ester containing domain (TED) from Complement C3, aka C3d or C3dg
(16)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d3d5ra_
A:
1b
d3d5rb_
B:
Fold
:
Spectrin repeat-like
(186)
Superfamily
:
Efb C-domain-like
(5)
Family
:
Efb C-domain-like
(5)
Protein domain
:
Fibrinogen-binding protein Efb (Fib)
(4)
Staphylococcus aureus [TaxId: 1280]
(4)
2a
d3d5rc1
C:11-75
2b
d3d5rd_
D:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3d5rA00 (A:2-298)
1b: CATH_3d5rB00 (B:2-298)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.20, no name defined]
(105)
Human (Homo sapiens)
(23)
1a
3d5rA00
A:2-298
1b
3d5rB00
B:2-298
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (122 KB)
Header - Asym.Unit
Biol.Unit 1 (60 KB)
Header - Biol.Unit 1
Biol.Unit 2 (60 KB)
Header - Biol.Unit 2
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