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3D4O
Biol. Unit 3
Info
Asym.Unit (201 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (98 KB)
Biol.Unit 3 (190 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DIPICOLINATE SYNTHASE SUBUNIT A (NP_243269.1) FROM BACILLUS HALODURANS AT 2.10 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
14 May 08 (Deposition) - 08 Jul 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Np_243269. 1, Dipicolinate Synthase Subunit A, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Alanine Dehydrogenase/Pnt, C-Terminal Domain Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Dipicolinate Synthase Subunit A (Np_243269. 1) From Bacillus Halodurans At 2. 10 A Resolution
To Be Published
[
close entry info
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Hetero Components
(3, 58)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2ao: SELENOMETHIONINE (MSEao)
2ap: SELENOMETHIONINE (MSEap)
2aq: SELENOMETHIONINE (MSEaq)
2ar: SELENOMETHIONINE (MSEar)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: D(-)-TARTARIC ACID (TARa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
13
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
44
Mod. Amino Acid
SELENOMETHIONINE
3
TAR
1
Ligand/Ion
D(-)-TARTARIC ACID
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY B:163 , HOH B:348 , HOH B:417
BINDING SITE FOR RESIDUE EDO B 293
02
AC2
SOFTWARE
GLN A:16 , LEU A:62 , LEU A:63 , PRO A:64 , ILE A:65 , TYR A:100 , LEU A:122
BINDING SITE FOR RESIDUE EDO A 293
03
AC3
SOFTWARE
ARG B:278 , PHE D:150 , ASP D:214 , HIS D:236 , HOH D:302 , HOH D:365
BINDING SITE FOR RESIDUE EDO D 293
04
AC4
SOFTWARE
ARG C:171 , ALA C:174 , ALA C:175 , ARG D:171
BINDING SITE FOR RESIDUE EDO C 293
05
AC5
SOFTWARE
GLN D:16 , LEU D:62 , LEU D:63 , PRO D:64 , ILE D:65 , TYR D:100 , LEU D:122 , HOH D:300
BINDING SITE FOR RESIDUE EDO D 294
06
AC6
SOFTWARE
GLN B:16 , LEU B:62 , LEU B:63 , PRO B:64 , ILE B:65 , TYR B:100 , HOH B:312
BINDING SITE FOR RESIDUE EDO B 294
07
AC7
SOFTWARE
ARG A:125 , HOH A:328 , HOH A:416 , SER B:187
BINDING SITE FOR RESIDUE EDO A 294
08
AC8
SOFTWARE
GLN C:16 , LEU C:62 , LEU C:63 , PRO C:64 , ILE C:65 , TYR C:100 , LEU C:122 , HOH C:322
BINDING SITE FOR RESIDUE EDO C 294
09
AC9
SOFTWARE
ARG D:15 , ASN D:132 , THR D:136 , GLY D:266 , PRO D:268 , HOH D:452 , HOH D:453 , HOH D:459
BINDING SITE FOR RESIDUE EDO D 295
10
BC1
SOFTWARE
TYR B:253 , ARG B:257
BINDING SITE FOR RESIDUE EDO B 295
11
BC2
SOFTWARE
ASP B:214 , HOH B:311 , HOH B:385 , HOH B:391
BINDING SITE FOR RESIDUE EDO B 296
12
BC3
SOFTWARE
ARG A:278 , PHE C:150 , ASP C:214 , HOH C:302
BINDING SITE FOR RESIDUE EDO C 295
13
BC4
SOFTWARE
GLY A:163 , ARG A:164 , HOH A:304 , HOH A:310 , HOH A:354 , HOH A:477
BINDING SITE FOR RESIDUE TAR A 295
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_3d4oA02 (A:126-272)
1b: CATH_3d4oB02 (B:126-272)
1c: CATH_3d4oC02 (C:126-272)
1d: CATH_3d4oD02 (D:126-272)
1e: CATH_3d4oB01 (B:0-125,B:273-291)
1f: CATH_3d4oC01 (C:0-125,C:273-290)
1g: CATH_3d4oA01 (A:0-125,A:273-291)
1h: CATH_3d4oD01 (D:0-125,D:273-290)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Bacillus halodurans. Organism_taxid: 86665.
(1)
1a
3d4oA02
A:126-272
1b
3d4oB02
B:126-272
1c
3d4oC02
C:126-272
1d
3d4oD02
D:126-272
1e
3d4oB01
B:0-125,B:273-291
1f
3d4oC01
C:0-125,C:273-290
1g
3d4oA01
A:0-125,A:273-291
1h
3d4oD01
D:0-125,D:273-290
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Pfam Domains
(0, 0)
Info
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Asymmetric Unit 1
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Asym.Unit (201 KB)
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