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3D4O
Biol. Unit 2
Info
Asym.Unit (201 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (98 KB)
Biol.Unit 3 (190 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DIPICOLINATE SYNTHASE SUBUNIT A (NP_243269.1) FROM BACILLUS HALODURANS AT 2.10 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
14 May 08 (Deposition) - 08 Jul 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Np_243269. 1, Dipicolinate Synthase Subunit A, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Alanine Dehydrogenase/Pnt, C-Terminal Domain Complex, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Dipicolinate Synthase Subunit A (Np_243269. 1) From Bacillus Halodurans At 2. 10 A Resolution
To Be Published
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Hetero Components
(2, 30)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2ao: SELENOMETHIONINE (MSEao)
2ap: SELENOMETHIONINE (MSEap)
2aq: SELENOMETHIONINE (MSEaq)
2ar: SELENOMETHIONINE (MSEar)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: D(-)-TARTARIC ACID (TARa)
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Label:
No.
Name
Count
Type
Full Name
1
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
22
Mod. Amino Acid
SELENOMETHIONINE
3
TAR
-1
Ligand/Ion
D(-)-TARTARIC ACID
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
6: AC7 (SOFTWARE)
7: AC9 (SOFTWARE)
8: BC1 (SOFTWARE)
9: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY B:163 , HOH B:348 , HOH B:417
BINDING SITE FOR RESIDUE EDO B 293
2
AC3
SOFTWARE
ARG B:278 , PHE D:150 , ASP D:214 , HIS D:236 , HOH D:302 , HOH D:365
BINDING SITE FOR RESIDUE EDO D 293
3
AC4
SOFTWARE
ARG C:171 , ALA C:174 , ALA C:175 , ARG D:171
BINDING SITE FOR RESIDUE EDO C 293
4
AC5
SOFTWARE
GLN D:16 , LEU D:62 , LEU D:63 , PRO D:64 , ILE D:65 , TYR D:100 , LEU D:122 , HOH D:300
BINDING SITE FOR RESIDUE EDO D 294
5
AC6
SOFTWARE
GLN B:16 , LEU B:62 , LEU B:63 , PRO B:64 , ILE B:65 , TYR B:100 , HOH B:312
BINDING SITE FOR RESIDUE EDO B 294
6
AC7
SOFTWARE
ARG A:125 , HOH A:328 , HOH A:416 , SER B:187
BINDING SITE FOR RESIDUE EDO A 294
7
AC9
SOFTWARE
ARG D:15 , ASN D:132 , THR D:136 , GLY D:266 , PRO D:268 , HOH D:452 , HOH D:453 , HOH D:459
BINDING SITE FOR RESIDUE EDO D 295
8
BC1
SOFTWARE
TYR B:253 , ARG B:257
BINDING SITE FOR RESIDUE EDO B 295
9
BC2
SOFTWARE
ASP B:214 , HOH B:311 , HOH B:385 , HOH B:391
BINDING SITE FOR RESIDUE EDO B 296
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_3d4oA02 (A:126-272)
1b: CATH_3d4oB02 (B:126-272)
1c: CATH_3d4oC02 (C:126-272)
1d: CATH_3d4oD02 (D:126-272)
1e: CATH_3d4oB01 (B:0-125,B:273-291)
1f: CATH_3d4oC01 (C:0-125,C:273-290)
1g: CATH_3d4oA01 (A:0-125,A:273-291)
1h: CATH_3d4oD01 (D:0-125,D:273-290)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Bacillus halodurans. Organism_taxid: 86665.
(1)
1a
3d4oA02
A:126-272
1b
3d4oB02
B:126-272
1c
3d4oC02
C:126-272
1d
3d4oD02
D:126-272
1e
3d4oB01
B:0-125,B:273-291
1f
3d4oC01
C:0-125,C:273-290
1g
3d4oA01
A:0-125,A:273-291
1h
3d4oD01
D:0-125,D:273-290
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (201 KB)
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