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3D4G
Asym. Unit
Info
Asym.Unit (1.3 MB)
Biol.Unit 1 (171 KB)
Biol.Unit 2 (172 KB)
Biol.Unit 3 (172 KB)
Biol.Unit 4 (170 KB)
Biol.Unit 5 (171 KB)
Biol.Unit 6 (172 KB)
Biol.Unit 7 (172 KB)
Biol.Unit 8 (171 KB)
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(1)
Title
:
ZP-N DOMAIN OF MAMMALIAN SPERM RECEPTOR ZP3 (CRYSTAL FORM II)
Authors
:
L. Jovine, M. Monne
Date
:
14 May 08 (Deposition) - 02 Dec 08 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Keywords
:
Fertilization, Oocyte, Egg Coat, Zona Pellucida, Vitelline Envelope, Zp Domain, Egg-Sperm Interaction, Species-Specific Gamete Recognition, Speciation, Biodiversity, Infertility, Extracellular Matrix, Immunoglobulin-Like Fold, Glycoprotein, Receptor, Secreted, Transmembrane, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Monne, L. Han, T. Schwend, S. Burendahl, L. Jovine
Crystal Structure Of The Zp-N Domain Of Zp3 Reveals The Cor Fold Of Animal Egg Coats
Nature V. 456 653 2008
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 32)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
1q: CALCIUM ION (CAq)
1r: CALCIUM ION (CAr)
1s: CALCIUM ION (CAs)
1t: CALCIUM ION (CAt)
1u: CALCIUM ION (CAu)
1v: CALCIUM ION (CAv)
1w: CALCIUM ION (CAw)
1x: CALCIUM ION (CAx)
2a: MALTOSE (MALa)
2b: MALTOSE (MALb)
2c: MALTOSE (MALc)
2d: MALTOSE (MALd)
2e: MALTOSE (MALe)
2f: MALTOSE (MALf)
2g: MALTOSE (MALg)
2h: MALTOSE (MALh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
24
Ligand/Ion
CALCIUM ION
2
MAL
8
Ligand/Ion
MALTOSE
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: BC1 (SOFTWARE)
10: BC2 (SOFTWARE)
11: BC3 (SOFTWARE)
12: BC4 (SOFTWARE)
13: BC5 (SOFTWARE)
14: BC7 (SOFTWARE)
15: BC8 (SOFTWARE)
16: CC1 (SOFTWARE)
17: CC2 (SOFTWARE)
18: CC4 (SOFTWARE)
19: CC5 (SOFTWARE)
20: CC7 (SOFTWARE)
21: CC8 (SOFTWARE)
22: CC9 (SOFTWARE)
23: DC1 (SOFTWARE)
24: DC2 (SOFTWARE)
25: DC4 (SOFTWARE)
26: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:13 , ASP A:15 , LYS A:16 , TRP A:63 , ALA A:64 , ASP A:66 , ARG A:67 , GLU A:112 , GLU A:154 , PRO A:155 , TYR A:156 , TRP A:231 , TRP A:341
BINDING SITE FOR RESIDUE MAL A 482
02
AC2
SOFTWARE
ASN B:13 , ASP B:15 , LYS B:16 , TRP B:63 , ALA B:64 , ASP B:66 , ARG B:67 , GLU B:112 , GLU B:154 , PRO B:155 , TYR B:156 , TRP B:341
BINDING SITE FOR RESIDUE MAL B 482
03
AC3
SOFTWARE
ASN C:13 , ASP C:15 , LYS C:16 , TRP C:63 , ALA C:64 , ASP C:66 , ARG C:67 , GLU C:112 , GLU C:154 , PRO C:155 , TYR C:156 , TRP C:231 , TRP C:341
BINDING SITE FOR RESIDUE MAL C 482
04
AC4
SOFTWARE
ASN D:13 , ASP D:15 , LYS D:16 , TRP D:63 , ALA D:64 , ASP D:66 , ARG D:67 , GLU D:112 , GLU D:154 , PRO D:155 , TYR D:156 , TRP D:231 , TRP D:341
BINDING SITE FOR RESIDUE MAL D 482
05
AC5
SOFTWARE
ASN E:13 , ASP E:15 , LYS E:16 , TRP E:63 , ALA E:64 , ASP E:66 , ARG E:67 , GLU E:112 , GLU E:154 , PRO E:155 , TYR E:156 , TRP E:231 , TRP E:341
BINDING SITE FOR RESIDUE MAL E 482
06
AC6
SOFTWARE
ASN F:13 , ASP F:15 , LYS F:16 , TRP F:63 , ALA F:64 , ASP F:66 , ARG F:67 , GLU F:112 , GLU F:154 , PRO F:155 , TYR F:156 , TRP F:231 , TRP F:341
BINDING SITE FOR RESIDUE MAL F 482
07
AC7
SOFTWARE
ASN G:13 , ASP G:15 , LYS G:16 , TRP G:63 , ALA G:64 , ASP G:66 , ARG G:67 , GLU G:112 , GLU G:154 , PRO G:155 , TYR G:156 , TRP G:231 , TRP G:341
BINDING SITE FOR RESIDUE MAL G 482
08
AC8
SOFTWARE
ASN H:13 , ASP H:15 , LYS H:16 , TRP H:63 , ALA H:64 , ASP H:66 , ARG H:67 , GLU H:112 , GLU H:154 , PRO H:155 , TYR H:156 , TRP H:341
BINDING SITE FOR RESIDUE MAL H 482
09
BC1
SOFTWARE
ASP A:185 , GLN A:366
BINDING SITE FOR RESIDUE CA A 484
10
BC2
SOFTWARE
SER A:234 , LYS A:296 , ASP A:297
BINDING SITE FOR RESIDUE CA A 485
11
BC3
SOFTWARE
ASP B:42
BINDING SITE FOR RESIDUE CA B 483
12
BC4
SOFTWARE
ASP B:185 , GLN B:366
BINDING SITE FOR RESIDUE CA B 484
13
BC5
SOFTWARE
SER B:234 , LYS B:296 , ASP B:297
BINDING SITE FOR RESIDUE CA B 485
14
BC7
SOFTWARE
ASP C:185 , GLN C:366
BINDING SITE FOR RESIDUE CA C 484
15
BC8
SOFTWARE
SER C:234 , LYS C:296 , ASP C:297
BINDING SITE FOR RESIDUE CA C 485
16
CC1
SOFTWARE
ASP D:185 , GLN D:366
BINDING SITE FOR RESIDUE CA D 484
17
CC2
SOFTWARE
SER D:234 , LYS D:296 , ASP D:297
BINDING SITE FOR RESIDUE CA D 485
18
CC4
SOFTWARE
ASP E:185 , GLN E:366
BINDING SITE FOR RESIDUE CA E 484
19
CC5
SOFTWARE
SER E:234 , LYS E:296 , ASP E:297
BINDING SITE FOR RESIDUE CA E 485
20
CC7
SOFTWARE
ASP F:185 , GLN F:366
BINDING SITE FOR RESIDUE CA F 484
21
CC8
SOFTWARE
SER F:234 , LYS F:296 , ASP F:297
BINDING SITE FOR RESIDUE CA F 485
22
CC9
SOFTWARE
ASP G:42
BINDING SITE FOR RESIDUE CA G 483
23
DC1
SOFTWARE
ASP G:185 , GLN G:366
BINDING SITE FOR RESIDUE CA G 484
24
DC2
SOFTWARE
SER G:234 , LYS G:296 , ASP G:297
BINDING SITE FOR RESIDUE CA G 485
25
DC4
SOFTWARE
ASP H:185 , GLN H:366
BINDING SITE FOR RESIDUE CA H 484
26
DC5
SOFTWARE
SER H:234 , LYS H:296 , ASP H:297
BINDING SITE FOR RESIDUE CA H 485
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: SBP_BACTERIAL_1 (A:108-125,B:108-125,C:108-125,D:10...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SBP_BACTERIAL_1
PS01037
Bacterial extracellular solute-binding proteins, family 1 signature.
MALE_ECOLI
133-150
8
A:108-125
B:108-125
C:108-125
D:108-125
E:108-125
F:108-125
G:108-125
H:108-125
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
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show SS bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (1.3 MB)
Header - Asym.Unit
Biol.Unit 1 (171 KB)
Header - Biol.Unit 1
Biol.Unit 2 (172 KB)
Header - Biol.Unit 2
Biol.Unit 3 (172 KB)
Header - Biol.Unit 3
Biol.Unit 4 (170 KB)
Header - Biol.Unit 4
Biol.Unit 5 (171 KB)
Header - Biol.Unit 5
Biol.Unit 6 (172 KB)
Header - Biol.Unit 6
Biol.Unit 7 (172 KB)
Header - Biol.Unit 7
Biol.Unit 8 (171 KB)
Header - Biol.Unit 8
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