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3D48
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (64 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PROLACTIN RECEPTOR ANTAGONIST BOUND TO THE EXTRACELLULAR DOMAIN OF THE PROLACTIN RECEPTOR
Authors
:
L. A. Svensson, J. Breinholt
Date
:
14 May 08 (Deposition) - 03 Jun 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : P,R
Biol. Unit 1: P,R (1x)
Keywords
:
Cytokine-Cytokine Receptor Complex, Four-Helix Bundle, Glycoprotein, Hormone, Lactation, Secreted, Alternative Splicing, Membrane, Receptor, Transmembrane, Hormone/Hormone Receptor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. A. Svensson, K. Bondensgaard, L. Norskov-Lauritsen, L. Christensen, P. Becker, M. D. Andersen, M. J. Maltesen, K. D. Rand, J. Breinholt
Crystal Structure Of A Prolactin Receptor Antagonist Bound To The Extracellular Domain Of The Prolactin Receptor
J. Biol. Chem. V. 283 19085 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CARBONATE ION (CO3a)
1b: CARBONATE ION (CO3b)
1c: CARBONATE ION (CO3c)
1d: CARBONATE ION (CO3d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO3
4
Ligand/Ion
CARBONATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER P:57 , CYS P:58 , HIS P:59 , LEU P:171 , CYS P:174
BINDING SITE FOR RESIDUE CO3 P 1
2
AC2
SOFTWARE
TYR R:190 , TRP R:191
BINDING SITE FOR RESIDUE CO3 R 211
3
AC3
SOFTWARE
CYS R:12 , ARG R:13 , GLN R:102
BINDING SITE FOR RESIDUE CO3 R 212
4
AC4
SOFTWARE
THR R:39 , TYR R:40 , HIS R:41 , ILE R:76 , MET R:78
BINDING SITE FOR RESIDUE CO3 R 213
[
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049172 (I76V, chain R, )
2: VAR_070894 (I146L, chain R, )
3: VAR_070895 (H188R, chain R, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049172
I
100
V
PRLR_HUMAN
Polymorphism
2228482
R
I
76
V
2
UniProt
VAR_070894
I
170
L
PRLR_HUMAN
Disease (MFAB)
---
R
I
146
L
3
UniProt
VAR_070895
H
212
R
PRLR_HUMAN
Disease (HPRL)
---
R
H
188
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 5)
Info
All PROSITE Patterns/Profiles
1: FN3 (R:3-104|R:105-204)
2: SOMATOTROPIN_1 (P:58-91)
3: HEMATOPO_REC_L_F1 (R:123-200)
4: SOMATOTROPIN_2 (P:174-191)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
PRLR_HUMAN
27-128
129-229
2
R:3-104
R:105-204
2
SOMATOTROPIN_1
PS00266
Somatotropin, prolactin and related hormones signature 1.
PRL_HUMAN
86-119
1
P:58-91
3
HEMATOPO_REC_L_F1
PS01352
Long hematopoietin receptor, single chain family signature.
PRLR_HUMAN
147-224
1
R:123-200
4
SOMATOTROPIN_2
PS00338
Somatotropin, prolactin and related hormones signature 2.
PRL_HUMAN
202-219
1
P:174-191
[
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Exons
(4, 4)
Info
All Exons
Exon 1.2c (P:13-40)
Exon 1.3 (P:41-76 (gaps))
Exon 1.4 (P:77-136 (gaps))
Exon 1.5 (P:137-198 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.1/1.2c
2: Boundary 1.2c/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000306482
1
ENSE00001148399
chr6:
22297730-22297184
547
PRL_HUMAN
1-10
10
0
-
-
1.2c
ENST00000306482
2c
ENSE00001174381
chr6:
22294813-22294638
176
PRL_HUMAN
10-68
59
1
P:13-40
28
1.3
ENST00000306482
3
ENSE00001174368
chr6:
22292874-22292767
108
PRL_HUMAN
69-104
36
1
P:41-76 (gaps)
36
1.4
ENST00000306482
4
ENSE00001174359
chr6:
22290582-22290403
180
PRL_HUMAN
105-164
60
1
P:77-136 (gaps)
60
1.5
ENST00000306482
5
ENSE00001148390
chr6:
22287822-22287480
343
PRL_HUMAN
165-227
63
1
P:137-198 (gaps)
62
[
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SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d3d48p_ (P:)
2a: SCOP_d3d48r1 (R:2-100)
2b: SCOP_d3d48r2 (R:101-204)
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Protein Domains
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(
)
Organisms
(
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(
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Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Long-chain cytokines
(46)
Protein domain
:
Prolactin (placental lactogen)
(4)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d3d48p_
P:
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
automated matches
(23)
Human (Homo sapiens) [TaxId: 9606]
(23)
2a
d3d48r1
R:2-100
2b
d3d48r2
R:101-204
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_3d48P00 (P:13-198)
2a: CATH_3d48R01 (R:2-101)
2b: CATH_3d48R02 (R:102-204)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Growth Hormone; Chain: A;
(136)
Homologous Superfamily
:
[code=1.20.1250.10, no name defined]
(130)
Human (Homo sapiens)
(110)
1a
3d48P00
P:13-198
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
3d48R01
R:2-101
2b
3d48R02
R:102-204
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (69 KB)
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