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3D3S
Biol. Unit 1
Info
Asym.Unit (123 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (58 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF L-2,4-DIAMINOBUTYRIC ACID ACETYLTRANSFERASE FROM BORDETELLA PARAPERTUSSIS
Authors
:
Y. Kim, L. Volkart, R. Jedrzejczak, A. Joachimiak, Midwest Center Fo Structural Genomics (Mcsg)
Date
:
12 May 08 (Deposition) - 15 Jul 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.87
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Alpha-Beta-Alpha Sandwich, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Acyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, L. Volkart, R. Jedrzejczak, A. Joachimiak
Crystal Structure Of L-2, 4-Diaminobutyric Acid Acetyltransferase From Bordetella Parapertussis.
To Be Published
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: 2,4-DIAMINOBUTYRIC ACID (DABa)
1b: 2,4-DIAMINOBUTYRIC ACID (DABb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DAB
-1
Ligand/Ion
2,4-DIAMINOBUTYRIC ACID
2
GOL
3
Ligand/Ion
GLYCEROL
3
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC8 (SOFTWARE)
06: AC9 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC8 (SOFTWARE)
11: BC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG B:85 , LEU B:86 , GLY B:87 , ARG B:88 , THR B:120
BINDING SITE FOR RESIDUE SO4 B 165
02
AC2
SOFTWARE
ARG B:82 , GLY B:83 , HIS B:84 , ARG B:85
BINDING SITE FOR RESIDUE SO4 B 166
03
AC3
SOFTWARE
SER A:49 , PRO A:50 , GLY A:51 , ARG A:53
BINDING SITE FOR RESIDUE SO4 A 165
04
AC4
SOFTWARE
ARG B:1 , SER B:49 , PRO B:50 , GLY B:51 , ARG B:53
BINDING SITE FOR RESIDUE SO4 B 167
05
AC8
SOFTWARE
ARG A:119
BINDING SITE FOR RESIDUE SO4 A 166
06
AC9
SOFTWARE
ARG A:82 , GLY A:83 , HIS A:84 , ARG A:85
BINDING SITE FOR RESIDUE SO4 A 167
07
BC2
SOFTWARE
LEU B:4 , PRO B:6 , HIS B:93 , ARG B:97
BINDING SITE FOR RESIDUE SO4 B 168
08
BC5
SOFTWARE
HIS A:40 , TYR A:61 , TRP A:73 , HIS B:40 , TYR B:61
BINDING SITE FOR RESIDUE DAB D 168
09
BC6
SOFTWARE
ALA A:14 , LEU A:18 , GLU A:21 , ILE A:54 , ASP A:55 , HIS A:78 , ARG A:80
BINDING SITE FOR RESIDUE GOL A 168
10
BC8
SOFTWARE
ARG B:8 , ARG B:9 , ASN B:10 , ARG D:104 , HIS D:105
BINDING SITE FOR RESIDUE GOL B 169
11
BC9
SOFTWARE
ASN A:114 , GLN A:115 , ALA A:116 , SER A:117
BINDING SITE FOR RESIDUE GOL A 169
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GNAT (A:2-157,B:2-157)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GNAT
PS51186
Gcn5-related N-acetyltransferase (GNAT) domain profile.
ECTA_BORPA
24-179
2
A:2-157
B:2-157
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3d3sA00 (A:1-159)
1b: CATH_3d3sB00 (B:1-159)
1c: CATH_3d3sC00 (C:0-159)
1d: CATH_3d3sD00 (D:1-161)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
[code=3.40.630.30, no name defined]
(126)
Bordetella parapertussis 12822. Organism_taxid: 257311. Strain: 12822/ nctc 13253.
(1)
1a
3d3sA00
A:1-159
1b
3d3sB00
B:1-159
1c
3d3sC00
C:0-159
1d
3d3sD00
D:1-161
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (123 KB)
Header - Asym.Unit
Biol.Unit 1 (62 KB)
Header - Biol.Unit 1
Biol.Unit 2 (58 KB)
Header - Biol.Unit 2
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