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3D3L
Biol. Unit 2
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Asym.Unit (152 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (74 KB)
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Title
:
THE 2.6 A CRYSTAL STRUCTURE OF THE LIPOXYGENASE DOMAIN OF HUMAN ARACHIDONATE 12-LIPOXYGENASE, 12S-TYPE (CASP TARGET)
Authors
:
L. Tresaugues, M. Moche, C. H. Arrowsmith, H. Berglund, R. D. Busam, R. Collins, L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, M. D. Herman, A. Johansson, I. Johansson A. Kallas, T. Karlberg, T. Kotenyova, L. Lehtio, M. E. Nilsson, T. Nyman, K. Olesen, C. Persson, J. Sagemark, H. Schueler, L. Svensson A. G. Thorsell, S. Van Den Berg, M. Welin, J. Weigelt, M. Wikstrom, P. Nordlund, Structural Genomics Consortium (Sgc)
Date
:
12 May 08 (Deposition) - 09 Sep 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Alox12, Iron-Binding Protein, Arachidonate 12-Lipoxygenase, 12-Lox, Platelet-Type Lipoxygenase 12, Oxygenase, Arachidonate, Structural Genomics, Structural Genomics Consortium, Sgc, Cytoplasm, Dioxygenase, Leukotriene Biosynthesis, Metal-Binding, Oxidoreductase, Polymorphism
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
L. Tresaugues, M. Moche, C. H. Arrowsmith, H. Berglund, R. D. Busam, R. Collins, L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, M. D. Herman, A. Johansson, I. Johansson, A. Kallas, T. Karlberg, T. Kotenyova, L. Lehtio, M. E. Nilsson, T. Nyman, K. Olesen, C. Persson, J. Sagemark, H. Schueler, L. Svensson, A. G. Thorsell, S. Van Den Berg, M. Welin, J. Weigelt, M. Wikstrom, P. Nordlund
Crystal Structure Of The Lipoxygenase Domain Of Human Arachidonate 12-Lipoxygenase, 12S-Type.
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
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Sites
(1, 1)
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All Sites
1: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
HIS B:360 , HIS B:365 , HIS B:540 , HOH B:802
BINDING SITE FOR RESIDUE FE B 801
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_030471 (E259K, chain B, )
2: VAR_018743 (R261R, chain B, )
3: VAR_004279 (A298T, chain B, )
4: VAR_018744 (N322S, chain B, )
5: VAR_018745 (R430H, chain B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_030471
E
259
K
LOX12_HUMAN
Polymorphism
4987104
B
E
259
K
2
UniProt
VAR_018743
Q
261
R
LOX12_HUMAN
Polymorphism
1126667
B
R
261
R
3
UniProt
VAR_004279
A
298
T
LOX12_HUMAN
Polymorphism
---
B
A
298
T
4
UniProt
VAR_018744
N
322
S
LOX12_HUMAN
Polymorphism
434473
B
N
322
S
5
UniProt
VAR_018745
R
430
H
LOX12_HUMAN
Polymorphism
11571342
B
R
430
H
SNP/SAP Summary Statistics
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PROSITE Patterns/Profiles
(2, 2)
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1: LIPOXYGENASE_1 (B:355-369)
2: LIPOXYGENASE_2 (B:382-392)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPOXYGENASE_1
PS00711
Lipoxygenases iron-binding region signature 1.
LOX12_HUMAN
355-369
1
-
B:355-369
2
LIPOXYGENASE_2
PS00081
Lipoxygenases iron-binding region signature 2.
LOX12_HUMAN
382-392
1
-
B:382-392
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Asymmetric Unit 1
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Asym.Unit (152 KB)
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