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3D3L
Asym. Unit
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Asym.Unit (152 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (74 KB)
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(1)
Title
:
THE 2.6 A CRYSTAL STRUCTURE OF THE LIPOXYGENASE DOMAIN OF HUMAN ARACHIDONATE 12-LIPOXYGENASE, 12S-TYPE (CASP TARGET)
Authors
:
L. Tresaugues, M. Moche, C. H. Arrowsmith, H. Berglund, R. D. Busam, R. Collins, L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, M. D. Herman, A. Johansson, I. Johansson A. Kallas, T. Karlberg, T. Kotenyova, L. Lehtio, M. E. Nilsson, T. Nyman, K. Olesen, C. Persson, J. Sagemark, H. Schueler, L. Svensson A. G. Thorsell, S. Van Den Berg, M. Welin, J. Weigelt, M. Wikstrom, P. Nordlund, Structural Genomics Consortium (Sgc)
Date
:
12 May 08 (Deposition) - 09 Sep 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Alox12, Iron-Binding Protein, Arachidonate 12-Lipoxygenase, 12-Lox, Platelet-Type Lipoxygenase 12, Oxygenase, Arachidonate, Structural Genomics, Structural Genomics Consortium, Sgc, Cytoplasm, Dioxygenase, Leukotriene Biosynthesis, Metal-Binding, Oxidoreductase, Polymorphism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Tresaugues, M. Moche, C. H. Arrowsmith, H. Berglund, R. D. Busam, R. Collins, L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, M. D. Herman, A. Johansson, I. Johansson, A. Kallas, T. Karlberg, T. Kotenyova, L. Lehtio, M. E. Nilsson, T. Nyman, K. Olesen, C. Persson, J. Sagemark, H. Schueler, L. Svensson, A. G. Thorsell, S. Van Den Berg, M. Welin, J. Weigelt, M. Wikstrom, P. Nordlund
Crystal Structure Of The Lipoxygenase Domain Of Human Arachidonate 12-Lipoxygenase, 12S-Type.
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
2
Ligand/Ion
FE (III) ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:360 , HIS A:365 , HIS A:540 , ASN A:544 , HOH A:802
BINDING SITE FOR RESIDUE FE A 801
2
AC2
SOFTWARE
HIS B:360 , HIS B:365 , HIS B:540 , HOH B:802
BINDING SITE FOR RESIDUE FE B 801
[
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SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_030471 (E259K, chain A/B, )
2: VAR_018743 (R261R, chain A/B, )
3: VAR_004279 (A298T, chain A/B, )
4: VAR_018744 (N322S, chain A/B, )
5: VAR_018745 (R430H, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_030471
E
259
K
LOX12_HUMAN
Polymorphism
4987104
A/B
E
259
K
2
UniProt
VAR_018743
Q
261
R
LOX12_HUMAN
Polymorphism
1126667
A/B
R
261
R
3
UniProt
VAR_004279
A
298
T
LOX12_HUMAN
Polymorphism
---
A/B
A
298
T
4
UniProt
VAR_018744
N
322
S
LOX12_HUMAN
Polymorphism
434473
A/B
N
322
S
5
UniProt
VAR_018745
R
430
H
LOX12_HUMAN
Polymorphism
11571342
A/B
R
430
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: LIPOXYGENASE_1 (A:355-369,B:355-369)
2: LIPOXYGENASE_2 (A:382-392,B:382-392)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPOXYGENASE_1
PS00711
Lipoxygenases iron-binding region signature 1.
LOX12_HUMAN
355-369
2
A:355-369
B:355-369
2
LIPOXYGENASE_2
PS00081
Lipoxygenases iron-binding region signature 2.
LOX12_HUMAN
382-392
2
A:382-392
B:382-392
[
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Exons
(11, 22)
Info
All Exons
Exon 1.4 (A:176-181 | B:176-181)
Exon 1.5 (A:181-216 | B:181-216)
Exon 1.6a (A:216-269 | B:216-269)
Exon 1.7b (A:270-317 (gaps) | B:270-317 (gaps...)
Exon 1.8 (A:318-387 | B:318-387)
Exon 1.9 (A:388-395 | B:388-393)
Exon 1.10 (A:423-473 | B:423-473)
Exon 1.11 (A:473-514 | B:473-514)
Exon 1.12b (A:514-547 | B:514-547)
Exon 1.13 (A:548-604 (gaps) | B:548-604 (gaps...)
Exon 1.14 (A:605-662 | B:605-662)
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All Exon Boundaries
01: Boundary 1.3/1.4
02: Boundary 1.4/1.5
03: Boundary 1.5/1.6a
04: Boundary 1.6a/1.7b
05: Boundary 1.7b/1.8
06: Boundary 1.8/1.9
07: Boundary 1.9/1.10
08: Boundary 1.10/1.11
09: Boundary 1.11/1.12b
10: Boundary 1.12b/1.13
11: Boundary 1.13/1.14
12: Boundary 1.14/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000251535
1
ENSE00001150037
chr17:
6899384-6899571
188
LOX12_HUMAN
1-45
45
0
-
-
1.2a
ENST00000251535
2a
ENSE00000680256
chr17:
6900145-6900346
202
LOX12_HUMAN
46-113
68
0
-
-
1.3
ENST00000251535
3
ENSE00000680257
chr17:
6901828-6901909
82
LOX12_HUMAN
113-140
28
0
-
-
1.4
ENST00000251535
4
ENSE00000680258
chr17:
6902034-6902156
123
LOX12_HUMAN
140-181
42
2
A:176-181
B:176-181
6
6
1.5
ENST00000251535
5
ENSE00000680260
chr17:
6902272-6902375
104
LOX12_HUMAN
181-216
36
2
A:181-216
B:181-216
36
36
1.6a
ENST00000251535
6a
ENSE00000905333
chr17:
6902625-6902785
161
LOX12_HUMAN
216-269
54
2
A:216-269
B:216-269
54
54
1.7b
ENST00000251535
7b
ENSE00000905334
chr17:
6903655-6903798
144
LOX12_HUMAN
270-317
48
2
A:270-317 (gaps)
B:270-317 (gaps)
48
48
1.8
ENST00000251535
8
ENSE00000905335
chr17:
6904921-6905130
210
LOX12_HUMAN
318-387
70
2
A:318-387
B:318-387
70
70
1.9
ENST00000251535
9
ENSE00000905338
chr17:
6908576-6908662
87
LOX12_HUMAN
388-416
29
2
A:388-395
B:388-393
8
6
1.10
ENST00000251535
10
ENSE00000887238
chr17:
6909177-6909346
170
LOX12_HUMAN
417-473
57
2
A:423-473
B:423-473
51
51
1.11
ENST00000251535
11
ENSE00000887240
chr17:
6909805-6909926
122
LOX12_HUMAN
473-514
42
2
A:473-514
B:473-514
42
42
1.12b
ENST00000251535
12b
ENSE00000949160
chr17:
6913066-6913166
101
LOX12_HUMAN
514-547
34
2
A:514-547
B:514-547
34
34
1.13
ENST00000251535
13
ENSE00000949161
chr17:
6913275-6913445
171
LOX12_HUMAN
548-604
57
2
A:548-604 (gaps)
B:548-604 (gaps)
57
57
1.14
ENST00000251535
14
ENSE00001204201
chr17:
6913563-6914055
493
LOX12_HUMAN
605-663
59
2
A:605-662
B:605-662
58
58
[
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SCOP Domains
(0, 0)
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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