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3D3B
Asym. Unit
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Asym.Unit (57 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE E. COLI NUSB-S10 TRANSCRIPTION ANTITERMINATION COMPLEX.
Authors
:
X. Luo, M. C. Wahl
Date
:
09 May 08 (Deposition) - 13 Jan 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A,J
Biol. Unit 1: A,J (1x)
Keywords
:
Nusb, S10, Nuse, Nut Site, Phage Lambda, Lambdan Antitermination, Rrn Antitermination, Transcription Control, Rna-Binding, Transcription, Transcription Regulation, Transcription Termination, Ribonucleoprotein, Ribosomal Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Luo, H. H. Hsiao, M. Bubunenko, G. Weber, D. L. Court, M. E. Gottesman H. Urlaub, M. C. Wahl
Structural And Functional Analysis Of The E. Coli Nusb-S10 Transcription Antitermination Complex.
Mol. Cell V. 32 791 2008
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFON... (NHEa)
1b: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFON... (NHEb)
1c: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFON... (NHEc)
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No.
Name
Count
Type
Full Name
1
NHE
3
Ligand/Ion
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS J:11 , ARG J:45 , THR J:48 , LEU J:66 , MET J:67 , LEU J:69 , LEU J:71
BINDING SITE FOR RESIDUE NHE J 83
2
AC2
SOFTWARE
LEU J:-2 , PHE J:13 , ASP J:14
BINDING SITE FOR RESIDUE NHE J 84
3
AC3
SOFTWARE
GLU A:37 , GLN A:38 , ARG J:5 , GLY J:38 , LEU J:42 , LEU J:52 , ASP J:54
BINDING SITE FOR RESIDUE NHE A 140
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_NUSB_ECOLI_001 (Y18D, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_NUSB_ECOLI_001
*
Y
18
D
NUSB_ECOLI
---
---
A
Y
18
D
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RIBOSOMAL_S10 (J:29-44)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_S10
PS00361
Ribosomal protein S10 signature.
RS10_ECOLI
29-44
1
J:29-44
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3d3ba_ (A:)
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Class
:
All alpha proteins
(14657)
Fold
:
NusB-like
(13)
Superfamily
:
NusB-like
(13)
Family
:
Antitermination factor NusB
(10)
Protein domain
:
automated matches
(3)
Escherichia coli K-12 [TaxId: 83333]
(3)
1a
d3d3ba_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_3d3bA00 (A:1-139)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
N-utilizing Substance Protein B Homolog; Chain A
(14)
Homologous Superfamily
:
N-utilizing Substance Protein B Homolog; Chain A
(14)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(2)
1a
3d3bA00
A:1-139
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Pfam Domains
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