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3D32
Asym. Unit
Info
Asym.Unit (65 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (28 KB)
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(1)
Title
:
COMPLEX OF GABA(A) RECEPTOR-ASSOCIATED PROTEIN (GABARAP) WITH A SYNTHETIC PEPTIDE
Authors
:
O. H. Weiergraeber, T. Stangler, D. Willbold
Date
:
09 May 08 (Deposition) - 05 Aug 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: B,D (1x)
Biol. Unit 2: A,C (1x)
Keywords
:
Alpha-Beta, Beta-Grasp Fold, Cytoskeleton, Golgi Apparatus, Membrane, Microtubule, Transport, Transport Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
O. H. Weiergraber, T. Stangler, Y. Thielmann, J. Mohrluder, K. Wiesehan, D. Willbold
Ligand Binding Mode Of Gaba(A) Receptor-Associated Protein.
J. Mol. Biol. V. 381 1320 2008
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
2a: SODIUM ION (NAa)
3a: AMINO GROUP (NH2a)
3b: AMINO GROUP (NH2b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
8
Ligand/Ion
CHLORIDE ION
2
NA
1
Ligand/Ion
SODIUM ION
3
NH2
2
Ligand/Ion
AMINO GROUP
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:45 , LEU A:46
BINDING SITE FOR RESIDUE NA A 120
02
AC2
SOFTWARE
THR A:89 , SER A:90 , PRO B:12 , GLU B:14 , LYS B:15
BINDING SITE FOR RESIDUE CL A 121
03
AC3
SOFTWARE
PRO A:12 , GLU A:14 , THR B:89 , SER B:90
BINDING SITE FOR RESIDUE CL B 120
04
AC4
SOFTWARE
ASP A:47 , ARG A:69
BINDING SITE FOR RESIDUE CL A 122
05
AC5
SOFTWARE
ASP B:47 , ARG B:69
BINDING SITE FOR RESIDUE CL B 121
06
AC6
SOFTWARE
LYS A:49 , LYS A:50
BINDING SITE FOR RESIDUE CL A 123
07
AC7
SOFTWARE
LYS B:48 , LYS B:49 , LYS B:50
BINDING SITE FOR RESIDUE CL B 122
08
AC8
SOFTWARE
TYR A:27 , ASP A:29 , ARG A:30
BINDING SITE FOR RESIDUE CL A 124
09
AC9
SOFTWARE
ARG A:73 , TYR B:7 , HIS B:11 , LYS B:49
BINDING SITE FOR RESIDUE CL B 123
10
BC1
SOFTWARE
TRP C:11 , PRO C:12
BINDING SITE FOR RESIDUE NH2 C 13
11
BC2
SOFTWARE
ALA A:74 , GLU A:75 , ASP A:76 , PRO D:12
BINDING SITE FOR RESIDUE NH2 D 13
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(4, 8)
Info
All Exons
Exon 1.1 (A:3-32 | B:3-32)
Exon 1.2 (A:33-59 | B:33-59)
Exon 1.3 (A:59-98 | B:59-98)
Exon 1.4 (A:99-118 | B:99-118)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000302386
1
ENSE00001310308
chr17:
7145772-7145560
213
GBRAP_HUMAN
1-30
30
2
A:3-32
B:3-32
30
30
1.2
ENST00000302386
2
ENSE00001279719
chr17:
7144998-7144920
79
GBRAP_HUMAN
31-57
27
2
A:33-59
B:33-59
27
27
1.3
ENST00000302386
3
ENSE00001279716
chr17:
7144779-7144661
119
GBRAP_HUMAN
57-96
40
2
A:59-98
B:59-98
40
40
1.4
ENST00000302386
4
ENSE00001293387
chr17:
7144238-7143333
906
GBRAP_HUMAN
97-117
21
2
A:99-118
B:99-118
20
20
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3d32a_ (A:)
1b: SCOP_d3d32b_ (B:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
GABARAP-like
(33)
Protein domain
:
GABA(A) receptor associated protein GABARAP
(7)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d3d32a_
A:
1b
d3d32b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3d32B00 (B:3-118)
1b: CATH_3d32A00 (A:1-118)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Human (Homo sapiens)
(177)
1a
3d32B00
B:3-118
1b
3d32A00
A:1-118
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Pfam Domains
(0, 0)
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Chain D
Asymmetric Unit 1
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Asym.Unit (65 KB)
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