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3D1G
Asym. Unit
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Asym.Unit (137 KB)
Biol.Unit 1 (133 KB)
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(1)
Title
:
STRUCTURE OF A SMALL MOLECULE INHIBITOR BOUND TO A DNA SLIDING CLAMP
Authors
:
R. E. Georgescu, O. Yurieva, K. Seung-Sup, J. Kuriyan, X-P. Kong, M. O'Donnell
Date
:
05 May 08 (Deposition) - 29 Jul 08 (Release) - 09 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.64
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Chemical Probe, Dna Polymerase, Dna Sliding Clamp, Dna Replication, Rational Drug Design, Antibiotic Target, Transferase, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. E. Georgescu, O. Yurieva, S. S. Kim, J. Kuriyan, X. P. Kong, M. O'Donnell
Structure Of A Small-Molecule Inhibitor Of A Dna Polymerase Sliding Clamp.
Proc. Natl. Acad. Sci. Usa V. 105 11116 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: [(5R)-5-(2,3-DIBROMO-5-ETHOXY-4-HY... (322a)
1b: [(5R)-5-(2,3-DIBROMO-5-ETHOXY-4-HY... (322b)
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No.
Name
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Type
Full Name
1
322
2
Ligand/Ion
[(5R)-5-(2,3-DIBROMO-5-ETHOXY-4-HYDROXYBENZYL)-4-OXO-2-THIOXO-1,3-THIAZOLIDIN-3-YL]ACETIC ACID
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:152 , THR A:172 , PRO A:242 , ASP A:243 , SER A:346 , MET A:362 , ASN B:251 , PRO B:252 , ASP B:253 , HIS B:255 , GLN B:355
BINDING SITE FOR RESIDUE 322 A 501
2
AC2
SOFTWARE
ARG B:152 , TYR B:154 , THR B:172 , GLY B:174 , SER B:346 , ALA B:353 , MET B:362
BINDING SITE FOR RESIDUE 322 B 502
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SAPs(SNPs)/Variants
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Exons
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SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3d1ga1 (A:1-122)
1b: SCOP_d3d1ga2 (A:123-244)
1c: SCOP_d3d1ga3 (A:245-366)
1d: SCOP_d3d1gb1 (B:1-122)
1e: SCOP_d3d1gb2 (B:123-244)
1f: SCOP_d3d1gb3 (B:245-366)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
DNA polymerase III, beta subunit
(31)
Protein domain
:
DNA polymerase III, beta subunit
(31)
Escherichia coli [TaxId: 562]
(30)
1a
d3d1ga1
A:1-122
1b
d3d1ga2
A:123-244
1c
d3d1ga3
A:245-366
1d
d3d1gb1
B:1-122
1e
d3d1gb2
B:123-244
1f
d3d1gb3
B:245-366
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3d1gA01 (A:1-123)
1b: CATH_3d1gB01 (B:1-123)
1c: CATH_3d1gA02 (A:124-247)
1d: CATH_3d1gB02 (B:124-247)
1e: CATH_3d1gA03 (A:248-366)
1f: CATH_3d1gB03 (B:248-366)
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
DNA Polymerase III; Chain A, domain 2
(13)
Homologous Superfamily
:
DNA Polymerase III, subunit A, domain 2
(13)
Escherichia coli. Strain: k12.
(2)
1a
3d1gA01
A:1-123
1b
3d1gB01
B:1-123
1c
3d1gA02
A:124-247
1d
3d1gB02
B:124-247
1e
3d1gA03
A:248-366
1f
3d1gB03
B:248-366
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Pfam Domains
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Asym.Unit (137 KB)
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