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3CZY
Biol. Unit 2
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Asym.Unit (90 KB)
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Biol.Unit 2 (43 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN HEME OXYGENASE-1 IN COMPLEX WITH 1-(ADAMANTAN-1-YL)-2-(1H-IMIDAZOL-1-YL)ETHANONE
Authors
:
Z. Jia, M. N. Rahman
Date
:
30 Apr 08 (Deposition) - 30 Sep 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.54
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Heme Oxygenase-1 Inhibitor Complex, Endoplasmic Reticulum, Heme, Iron, Metal-Binding, Microsome, Oxidoreductase, Phosphoprotein, Polymorphism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. N. Rahman, J. Z. Vlahakis, W. A. Szarek, K. Nakatsu, Z. Jia
X-Ray Crystal Structure Of Human Heme Oxygenase-1 In Complex With 1-(Adamantan-1-Yl)-2-(1H-Imidazol-1-Yl)Ethanone: A Common Binding Mode For Imidazole-Based Heme Oxygenase-1 Inhibitors.
J. Med. Chem. V. 51 5943 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 1-(ADAMANTAN-1-YL)-2-(1H-IMIDAZOL-... (AD8a)
1b: 1-(ADAMANTAN-1-YL)-2-(1H-IMIDAZOL-... (AD8b)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
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Label:
No.
Name
Count
Type
Full Name
1
AD8
1
Ligand/Ion
1-(ADAMANTAN-1-YL)-2-(1H-IMIDAZOL-1-YL)ETHANONE
2
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(2, 2)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
HIS B:25 , ALA B:28 , GLU B:29 , MET B:34 , GLN B:38 , TYR B:134 , THR B:135 , GLY B:139 , SER B:142 , LYS B:179 , ARG B:183 , PHE B:207
BINDING SITE FOR RESIDUE HEM B 300
2
AC4
SOFTWARE
GLY B:139 , ASP B:140 , GLY B:143 , PHE B:214
BINDING SITE FOR RESIDUE AD8 B 901
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_022156 (P106L, chain B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_022156
P
106
L
HMOX1_HUMAN
Polymorphism
9282702
B
P
106
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HEME_OXYGENASE (B:129-139)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEME_OXYGENASE
PS00593
Heme oxygenase signature.
HMOX1_HUMAN
129-139
1
-
B:129-139
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Exons
(0, 0)
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3czya_ (A:)
1b: SCOP_d3czyb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
Heme oxygenase-like
(107)
Superfamily
:
Heme oxygenase-like
(107)
Family
:
Eukaryotic type heme oxygenase
(69)
Protein domain
:
Heme oxygenase-1 (HO-1)
(49)
Human (Homo sapiens) [TaxId: 9606]
(23)
1a
d3czya_
A:
1b
d3czyb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3czyA00 (A:10-223)
1b: CATH_3czyB00 (B:10-223)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Heme Oxygenase; Chain A
(84)
Homologous Superfamily
:
Heme Oxygenase; Chain A
(84)
Human (Homo sapiens)
(25)
1a
3czyA00
A:10-223
1b
3czyB00
B:10-223
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Pfam Domains
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Chain B
Asymmetric Unit 1
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