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3CZT
Asym. Unit
Info
Asym.Unit (45 KB)
Biol.Unit 1 (79 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF S100B IN THE CALCIUM AND ZINC LOADED STATE AT PH 9
Authors
:
T. Ostendorp, J. Diez, C. W. Heizmann, G. Fritz
Date
:
30 Apr 08 (Deposition) - 14 Apr 09 (Release) - 04 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : X
Biol. Unit 1: X (2x)
Keywords
:
S100, Ef-Hand, Calcium, Metal-Binding, Nucleus, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Ostendorp, J. Diez, C. W. Heizmann, G. Fritz
The Crystal Structures Of Human S100B In The Zinc- And Calcium-Loaded State At Three Ph Values Reveal Zinc Ligand Swapping.
Biochim. Biophys. Acta V. 1813 1083 2011
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
ZN
1
Ligand/Ion
ZINC ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (unknown)
2: AC2 (unknown)
3: AC3 (unknown)
4: AC4 (unknown)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
unknown
SER X:18 , GLU X:21 , ASP X:23 , LYS X:26 , GLU X:31 , HOH X:120
BINDING SITE FOR RESIDUE CA X 92
2
AC2
unknown
ASP X:61 , ASP X:63 , ASP X:65 , GLU X:67 , GLU X:72 , HOH X:104
BINDING SITE FOR RESIDUE CA X 93
3
AC3
unknown
HOH X:126 , HOH X:135 , HOH X:161 , HOH X:187
BINDING SITE FOR RESIDUE CA X 94
4
AC4
unknown
HIS X:15 , HIS X:25 , HIS X:85 , HIS X:90
BINDING SITE FOR RESIDUE ZN X 95
5
AC5
SOFTWARE
SER X:18 , GLU X:21 , ASP X:23 , LYS X:26 , GLU X:31 , HOH X:120
BINDING SITE FOR RESIDUE CA X 92
6
AC6
SOFTWARE
ASP X:61 , ASP X:63 , ASP X:65 , GLU X:67 , GLU X:72 , HOH X:104
BINDING SITE FOR RESIDUE CA X 93
7
AC7
SOFTWARE
HOH X:126 , HOH X:135 , HOH X:161 , HOH X:187
BINDING SITE FOR RESIDUE CA X 94
8
AC8
SOFTWARE
HIS X:15 , HIS X:25 , HIS X:85 , HIS X:90
BINDING SITE FOR RESIDUE ZN X 95
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (X:48-83)
2: S100_CABP (X:56-77)
3: EF_HAND_1 (X:61-73)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
S100B_HUMAN
49-84
1
X:48-83
2
S100_CABP
PS00303
S-100/ICaBP type calcium binding protein signature.
S100B_HUMAN
57-78
1
X:56-77
3
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
S100B_HUMAN
62-74
1
X:61-73
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Exons
(2, 2)
Info
All Exons
Exon 1.2a (X:0-45)
Exon 1.4a (X:46-90)
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All Exon Boundaries
1: Boundary -/1.2a
2: Boundary 1.2a/1.4a
3: Boundary 1.4a/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000397648
2a
ENSE00001529559
chr21:
48022806-48022191
616
S100B_HUMAN
1-46
46
1
X:0-45
46
1.4a
ENST00000397648
4a
ENSE00001529558
chr21:
48019416-48019194
223
S100B_HUMAN
47-92
46
1
X:46-90
45
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3cztx_ (X:)
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Classes
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)
(
)
Folds
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)
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)
Superfamilies
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)
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)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
S100 proteins
(101)
Protein domain
:
Calcyclin (S100)
(69)
Human (Homo sapiens), s100b [TaxId: 9606]
(7)
1a
d3cztx_
X:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3cztX00 (X:0-90)
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(
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
1a
3cztX00
X:0-90
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain X
Asymmetric Unit 1
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