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3CYE
Biol. Unit 1
Info
Asym.Unit (281 KB)
Biol.Unit 1 (274 KB)
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Title
:
CYRSTAL STRUCTURE OF THE NATIVE 1918 H1N1 NEURAMINIDASE FROM A CRYSTAL WITH LATTICE-TRANSLOCATION DEFECTS
Authors
:
X. Zhu, X. Xu, I. A. Wilson
Date
:
25 Apr 08 (Deposition) - 05 Aug 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B (2 x)
Biol. Unit 1: A,B (2x)
Keywords
:
6-Bladed Beta-Propeller, Glycoprotein, Glycosidase, Hydrolase, Membrane, Metal-Binding, Signal-Anchor, Transmembrane, Virion, Lattice-Translocation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Zhu, X. Xu, I. A. Wilson
Structure Determination Of The 1918 H1N1 Neuraminidase From A Crystal With Lattice-Translocation Defects
Acta Crystallogr. , Sect. D V. 64 843 2008
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(5, 21)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6a: PHOSPHATE ION (PO4a)
6b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
5
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
GOL
10
Ligand/Ion
GLYCEROL
4
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
PO4
1
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC7 (SOFTWARE)
06: AC8 (SOFTWARE)
07: AC9 (SOFTWARE)
08: BC2 (SOFTWARE)
09: BC3 (SOFTWARE)
10: BC4 (SOFTWARE)
11: BC5 (SOFTWARE)
12: BC6 (SOFTWARE)
13: BC7 (SOFTWARE)
14: BC8 (SOFTWARE)
15: BC9 (SOFTWARE)
16: CC1 (SOFTWARE)
17: CC2 (SOFTWARE)
18: CC3 (SOFTWARE)
19: CC4 (SOFTWARE)
20: CC5 (SOFTWARE)
21: CC6 (SOFTWARE)
22: CC7 (SOFTWARE)
23: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:146 , THR A:148 , ILE A:437
BINDING SITE FOR RESIDUE NAG A 1001
02
AC2
SOFTWARE
ASN B:146 , THR B:148
BINDING SITE FOR RESIDUE NAG B 2001
03
AC5
SOFTWARE
LYS A:366 , GLU A:375 , ARG A:394 , ILE A:400
BINDING SITE FOR RESIDUE MAN B 2004
04
AC6
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , ASN A:347
BINDING SITE FOR RESIDUE CA A 1
05
AC7
SOFTWARE
ASP A:379 , ASN A:381 , ASP A:387 , SER A:389
BINDING SITE FOR RESIDUE CA A 2
06
AC8
SOFTWARE
ASP B:379 , ASN B:381 , ASP B:387 , SER B:389
BINDING SITE FOR RESIDUE CA B 3
07
AC9
SOFTWARE
ASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , ASN B:347
BINDING SITE FOR RESIDUE CA B 4
08
BC2
SOFTWARE
GLN A:249 , ALA A:250 , LEU A:268 , ASN A:269 , ALA A:270 , PRO A:271 , ASP B:311
BINDING SITE FOR RESIDUE ACT A 3000
09
BC3
SOFTWARE
ARG B:152 , TRP B:178 , SER B:179
BINDING SITE FOR RESIDUE ACT B 3001
10
BC4
SOFTWARE
THR A:225 , GLU A:227 , GLU A:277
BINDING SITE FOR RESIDUE ACT A 3002
11
BC5
SOFTWARE
ARG A:152 , TRP A:178
BINDING SITE FOR RESIDUE ACT A 3003
12
BC6
SOFTWARE
THR B:225 , GLU B:227 , GLU B:277
BINDING SITE FOR RESIDUE ACT B 3004
13
BC7
SOFTWARE
ARG A:224 , GLU A:276 , GLU A:277 , ARG A:292 , ASN A:294
BINDING SITE FOR RESIDUE PO4 A 1000
14
BC8
SOFTWARE
ASN A:170 , SER A:171 , GLU B:165
BINDING SITE FOR RESIDUE GOL A 3004
15
BC9
SOFTWARE
PRO A:93 , ILE A:94 , TYR A:356 , TRP A:361
BINDING SITE FOR RESIDUE GOL A 3005
16
CC1
SOFTWARE
PRO B:93 , ILE B:94 , TYR B:356 , TRP B:361 , TRP B:378
BINDING SITE FOR RESIDUE GOL B 1002
17
CC2
SOFTWARE
SER A:90 , LEU A:91 , ASP A:283 , ARG A:355 , ASP A:357
BINDING SITE FOR RESIDUE GOL A 1003
18
CC3
SOFTWARE
SER B:246 , GLU B:276 , GLU B:277 , ARG B:292
BINDING SITE FOR RESIDUE GOL B 1004
19
CC4
SOFTWARE
GLU A:165 , ASN A:170 , TYR B:169A , ASN B:170 , SER B:171
BINDING SITE FOR RESIDUE GOL A 1005
20
CC5
SOFTWARE
ASP B:283 , MET B:288 , ARG B:355
BINDING SITE FOR RESIDUE GOL B 1006
21
CC6
SOFTWARE
SER B:90 , LEU B:91 , ASP B:283 , ARG B:355 , TYR B:356 , ASP B:357
BINDING SITE FOR RESIDUE GOL B 1007
22
CC7
SOFTWARE
ARG B:118 , GLU B:119 , ASP B:151 , ARG B:156 , TRP B:178
BINDING SITE FOR RESIDUE GOL B 1008
23
CC8
SOFTWARE
GLY A:331 , THR A:332 , ASP A:387 , SER A:388
BINDING SITE FOR RESIDUE GOL A 1009
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3cyea_ (A:)
1b: SCOP_d3cyeb_ (B:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Influenza A virus [TaxId: 11320]
(31)
1a
d3cyea_
A:
1b
d3cyeb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3cyeA00 (A:83-468)
1b: CATH_3cyeB00 (B:83-468)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Influenza a virus. Strain: a/brevig mission/1/1918.
(1)
1a
3cyeA00
A:83-468
1b
3cyeB00
B:83-468
[
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]
Pfam Domains
(0, 0)
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all PFAM domains
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Atom Selection
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select residue range 5 to 10 in all chains
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