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3CYE
Asym. Unit
Info
Asym.Unit (281 KB)
Biol.Unit 1 (274 KB)
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Models
(2 )
Title
:
CYRSTAL STRUCTURE OF THE NATIVE 1918 H1N1 NEURAMINIDASE FROM A CRYSTAL WITH LATTICE-TRANSLOCATION DEFECTS
Authors
:
X. Zhu, X. Xu, I. A. Wilson
Date
:
25 Apr 08 (Deposition) - 05 Aug 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B (2 x)
Biol. Unit 1: A,B (2x)
Keywords
:
6-Bladed Beta-Propeller, Glycoprotein, Glycosidase, Hydrolase, Membrane, Metal-Binding, Signal-Anchor, Transmembrane, Virion, Lattice-Translocation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Zhu, X. Xu, I. A. Wilson
Structure Determination Of The 1918 H1N1 Neuraminidase From A Crystal With Lattice-Translocation Defects
Acta Crystallogr. , Sect. D V. 64 843 2008
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(6, 36)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6a: PHOSPHATE ION (PO4a)
6b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
8
Ligand/Ion
ACETATE ION
2
CA
7
Ligand/Ion
CALCIUM ION
3
GOL
14
Ligand/Ion
GLYCEROL
4
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
PO4
2
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC7 (SOFTWARE)
06: AC8 (SOFTWARE)
07: AC9 (SOFTWARE)
08: BC2 (SOFTWARE)
09: BC3 (SOFTWARE)
10: BC4 (SOFTWARE)
11: BC5 (SOFTWARE)
12: BC6 (SOFTWARE)
13: BC7 (SOFTWARE)
14: BC8 (SOFTWARE)
15: BC9 (SOFTWARE)
16: CC1 (SOFTWARE)
17: CC2 (SOFTWARE)
18: CC3 (SOFTWARE)
19: CC4 (SOFTWARE)
20: CC5 (SOFTWARE)
21: CC6 (SOFTWARE)
22: CC7 (SOFTWARE)
23: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:146 , THR A:148 , ILE A:437
BINDING SITE FOR RESIDUE NAG A 1001
02
AC2
SOFTWARE
ASN B:146 , THR B:148
BINDING SITE FOR RESIDUE NAG B 2001
03
AC5
SOFTWARE
LYS A:366 , GLU A:375 , ARG A:394 , ILE A:400
BINDING SITE FOR RESIDUE MAN B 2004
04
AC6
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , ASN A:347
BINDING SITE FOR RESIDUE CA A 1
05
AC7
SOFTWARE
ASP A:379 , ASN A:381 , ASP A:387 , SER A:389
BINDING SITE FOR RESIDUE CA A 2
06
AC8
SOFTWARE
ASP B:379 , ASN B:381 , ASP B:387 , SER B:389
BINDING SITE FOR RESIDUE CA B 3
07
AC9
SOFTWARE
ASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , ASN B:347
BINDING SITE FOR RESIDUE CA B 4
08
BC2
SOFTWARE
GLN A:249 , ALA A:250 , LEU A:268 , ASN A:269 , ALA A:270 , PRO A:271 , ASP B:311
BINDING SITE FOR RESIDUE ACT A 3000
09
BC3
SOFTWARE
ARG B:152 , TRP B:178 , SER B:179
BINDING SITE FOR RESIDUE ACT B 3001
10
BC4
SOFTWARE
THR A:225 , GLU A:227 , GLU A:277
BINDING SITE FOR RESIDUE ACT A 3002
11
BC5
SOFTWARE
ARG A:152 , TRP A:178
BINDING SITE FOR RESIDUE ACT A 3003
12
BC6
SOFTWARE
THR B:225 , GLU B:227 , GLU B:277
BINDING SITE FOR RESIDUE ACT B 3004
13
BC7
SOFTWARE
ARG A:224 , GLU A:276 , GLU A:277 , ARG A:292 , ASN A:294
BINDING SITE FOR RESIDUE PO4 A 1000
14
BC8
SOFTWARE
ASN A:170 , SER A:171 , GLU B:165
BINDING SITE FOR RESIDUE GOL A 3004
15
BC9
SOFTWARE
PRO A:93 , ILE A:94 , TYR A:356 , TRP A:361
BINDING SITE FOR RESIDUE GOL A 3005
16
CC1
SOFTWARE
PRO B:93 , ILE B:94 , TYR B:356 , TRP B:361 , TRP B:378
BINDING SITE FOR RESIDUE GOL B 1002
17
CC2
SOFTWARE
SER A:90 , LEU A:91 , ASP A:283 , ARG A:355 , ASP A:357
BINDING SITE FOR RESIDUE GOL A 1003
18
CC3
SOFTWARE
SER B:246 , GLU B:276 , GLU B:277 , ARG B:292
BINDING SITE FOR RESIDUE GOL B 1004
19
CC4
SOFTWARE
GLU A:165 , ASN A:170 , TYR B:169A , ASN B:170 , SER B:171
BINDING SITE FOR RESIDUE GOL A 1005
20
CC5
SOFTWARE
ASP B:283 , MET B:288 , ARG B:355
BINDING SITE FOR RESIDUE GOL B 1006
21
CC6
SOFTWARE
SER B:90 , LEU B:91 , ASP B:283 , ARG B:355 , TYR B:356 , ASP B:357
BINDING SITE FOR RESIDUE GOL B 1007
22
CC7
SOFTWARE
ARG B:118 , GLU B:119 , ASP B:151 , ARG B:156 , TRP B:178
BINDING SITE FOR RESIDUE GOL B 1008
23
CC8
SOFTWARE
GLY A:331 , THR A:332 , ASP A:387 , SER A:388
BINDING SITE FOR RESIDUE GOL A 1009
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3cyea_ (A:)
1b: SCOP_d3cyeb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Influenza A virus [TaxId: 11320]
(31)
1a
d3cyea_
A:
1b
d3cyeb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3cyeA00 (A:83-468)
1b: CATH_3cyeB00 (B:83-468)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Influenza a virus. Strain: a/brevig mission/1/1918.
(1)
1a
3cyeA00
A:83-468
1b
3cyeB00
B:83-468
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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Protein
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Protein & NOT Variant
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (281 KB)
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