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3CX5
Asym. Unit
Info
Asym.Unit (783 KB)
Biol.Unit 1 (767 KB)
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(1)
Title
:
STRUCTURE OF COMPLEX III WITH BOUND CYTOCHROME C IN REDUCED STATE AND DEFINITION OF A MINIMAL CORE INTERFACE FOR ELECTRON TRANSFER.
Authors
:
S. R. N. Solmaz, C. Hunte
Date
:
23 Apr 08 (Deposition) - 13 May 08 (Release) - 25 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W (1x)
Keywords
:
Complex Iii, Cytochrome C, Electron Transfer Complex, Cytochrome Bc1 Complex, Mitochondrialtransmembrane Complex, Respiratory Chain, Transient Protein-Protein Interaction, Electron Transport, Inner Membrane, Mitochondrion, Transit Peptide, Transport, Phosphoprotein, Heme, Iron, Metal-Binding, Iron-Sulfur, Oxidoreductase, Methylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. R. Solmaz, C. Hunte
Structure Of Complex Iii With Bound Cytochrome C In Reduced State And Definition Of A Minimal Core Interface For Electron Transfer.
J. Biol. Chem. V. 283 17542 2008
[
close entry info
]
Hetero Components
(12, 26)
Info
All Hetero Components
01a: (1R)-2-(PHOSPHONOOXY)-1-[(TRIDECAN... (6PHa)
01b: (1R)-2-(PHOSPHONOOXY)-1-[(TRIDECAN... (6PHb)
02a: (1R)-2-(DODECANOYLOXY)-1-[(PHOSPHO... (7PHa)
02b: (1R)-2-(DODECANOYLOXY)-1-[(PHOSPHO... (7PHb)
03a: (2R)-3-{[(S)-(2-AMINOETHOXY)(HYDRO... (8PEa)
03b: (2R)-3-{[(S)-(2-AMINOETHOXY)(HYDRO... (8PEb)
04a: (1R)-2-{[(S)-(2-AMINOETHOXY)(HYDRO... (9PEa)
04b: (1R)-2-{[(S)-(2-AMINOETHOXY)(HYDRO... (9PEb)
05a: (2R,5S,11R,14R)-5,8,11-TRIHYDROXY-... (CN3a)
05b: (2R,5S,11R,14R)-5,8,11-TRIHYDROXY-... (CN3b)
06a: (5S,11R)-5,8,11-TRIHYDROXY-5,11-DI... (CN5a)
07a: FE2/S2 (INORGANIC) CLUSTER (FESa)
07b: FE2/S2 (INORGANIC) CLUSTER (FESb)
08a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
08b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
08c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
08d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
08e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
08f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
08g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
09a: N-TRIMETHYLLYSINE (M3La)
10a: STIGMATELLIN A (SMAa)
10b: STIGMATELLIN A (SMAb)
11a: SUCROSE (SUCa)
12a: UNDECYL-MALTOSIDE (UMQa)
12b: UNDECYL-MALTOSIDE (UMQb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6PH
2
Ligand/Ion
(1R)-2-(PHOSPHONOOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYLPENTADECANOATE
2
7PH
2
Ligand/Ion
(1R)-2-(DODECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYLTETRADECANOATE
3
8PE
2
Ligand/Ion
(2R)-3-{[(S)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-2-(TETRADECANOYLOXY)PROPYL OCTADECANOATE
4
9PE
2
Ligand/Ion
(1R)-2-{[(S)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(HEPTANOYLOXY)METHYL]ETHYL OCTADECANOATE
5
CN3
2
Ligand/Ion
(2R,5S,11R,14R)-5,8,11-TRIHYDROXY-2-(NONANOYLOXY)-5,11-DIOXIDO-16-OXO-14-[(PROPANOYLOXY)METHYL]-4,6,10,12,15-PENTAOXA-5,11-DIPHOSPHANONADEC-1-YL UNDECANOATE
6
CN5
1
Ligand/Ion
(5S,11R)-5,8,11-TRIHYDROXY-5,11-DIOXIDO-17-OXO-4,6,10,12,16-PENTAOXA-5,11-DIPHOSPHAOCTADEC-1-YLPENTADECANOATE
7
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
8
HEM
7
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
9
M3L
1
Mod. Amino Acid
N-TRIMETHYLLYSINE
10
SMA
2
Ligand/Ion
STIGMATELLIN A
11
SUC
1
Ligand/Ion
SUCROSE
12
UMQ
2
Ligand/Ion
UNDECYL-MALTOSIDE
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU O:201 , PRO O:202 , LEU O:208 , GLY O:211 , SER O:212 , ASN O:213 , TYR O:214 , ARG O:227 , LYS W:16 , LEU W:20 , GLN W:21
BINDING SITE FOR RESIDUE SUC O 4146
02
AC2
SOFTWARE
LEU C:40 , GLN C:43 , GLY C:47 , MET C:50 , ARG C:79 , HIS C:82 , ALA C:86 , PHE C:89 , THR C:127 , GLY C:131 , HIS C:183 , TYR C:184 , PRO C:187
BINDING SITE FOR RESIDUE HEM C 4001
03
AC3
SOFTWARE
TRP C:30 , GLY C:33 , LEU C:36 , HIS C:96 , LYS C:99 , SER C:105 , LEU C:113 , TRP C:114 , GLY C:117 , ILE C:120 , HIS C:197 , LEU C:201 , SER C:206 , SER C:207
BINDING SITE FOR RESIDUE HEM C 4002
04
AC4
SOFTWARE
CYS D:101 , CYS D:104 , HIS D:105 , ASN D:169 , ILE D:180 , ARG D:184 , TYR D:190 , PHE D:218 , ILE D:223 , ALA D:224 , MET D:225
BINDING SITE FOR RESIDUE HEM D 4003
05
AC5
SOFTWARE
CYS E:159 , HIS E:161 , LEU E:162 , CYS E:178 , HIS E:181 , SER E:183
BINDING SITE FOR RESIDUE FES E 4004
06
AC6
SOFTWARE
ILE C:125 , MET C:139 , GLY C:143 , ILE C:147 , PRO C:271 , GLU C:272 , LEU C:275 , TYR C:279 , MET C:295 , CYS P:180 , HIS P:181
BINDING SITE FOR RESIDUE SMA C 4005
07
AC7
SOFTWARE
TRP C:29 , MET C:91 , ALA C:98 , TYR C:102 , TYR C:103 , PHE C:278 , PHE C:327 , TYR C:359 , GLU G:82 , ARG H:51
BINDING SITE FOR RESIDUE 8PE C 4010
08
AC8
SOFTWARE
PHE C:3 , ASN C:7 , TYR C:9 , LEU C:10 , THR N:112 , ASN N:115 , MET N:199
BINDING SITE FOR RESIDUE 9PE C 4011
09
AC9
SOFTWARE
SER A:450 , PHE C:227 , SER E:67
BINDING SITE FOR RESIDUE 6PH A 4013
10
BC1
SOFTWARE
PHE C:245 , LYS D:272 , THR D:273 , ILE D:276 , LEU D:277 , GLY E:70 , SER E:73 , THR E:77
BINDING SITE FOR RESIDUE 7PH D 4014
11
BC2
SOFTWARE
TRP A:427 , ASP A:428 , SER A:453 , MET A:454 , MET A:455 , ARG A:456 , TYR E:57 , SER E:68 , ASN I:14 , ALA I:15 , PHE I:17
BINDING SITE FOR RESIDUE UMQ A 4021
12
BC3
SOFTWARE
ASN C:27 , TYR C:28 , PHE C:88 , MET C:95 , LEU C:235 , TYR D:281 , ILE D:285 , LYS D:288 , LYS D:289 , HIS G:85 , ARG H:51
BINDING SITE FOR RESIDUE CN3 D 4031
13
BC4
SOFTWARE
LEU C:12 , TYR C:16 , HIS C:202 , TYR N:16 , MET N:199 , HIS N:202 , ASP N:229
BINDING SITE FOR RESIDUE CN5 C 4033
14
BC5
SOFTWARE
LEU N:40 , GLN N:43 , GLY N:47 , MET N:50 , ARG N:79 , HIS N:82 , THR N:127 , ALA N:128 , GLY N:131 , HIS N:183 , TYR N:184 , PRO N:187
BINDING SITE FOR RESIDUE HEM N 4021
15
BC6
SOFTWARE
TRP N:30 , GLY N:33 , LEU N:36 , GLY N:37 , HIS N:96 , LYS N:99 , SER N:105 , LEU N:113 , GLY N:117 , ILE N:120 , HIS N:197 , LEU N:201 , SER N:206 , SER N:207
BINDING SITE FOR RESIDUE HEM N 4022
16
BC7
SOFTWARE
CYS O:101 , CYS O:104 , HIS O:105 , ASN O:169 , ARG O:184 , TYR O:190 , ILE O:191 , PHE O:218 , ILE O:223 , ALA O:224 , MET O:225 , LEU O:229
BINDING SITE FOR RESIDUE HEM O 4023
17
BC8
SOFTWARE
CYS P:159 , HIS P:161 , LEU P:162 , CYS P:178 , HIS P:181 , SER P:183
BINDING SITE FOR RESIDUE FES P 4024
18
BC9
SOFTWARE
CYS E:180 , HIS E:181 , ILE N:125 , MET N:139 , GLY N:143 , ILE N:147 , PRO N:271 , GLU N:272 , LEU N:275 , TYR N:279 , MET N:295 , PHE N:296
BINDING SITE FOR RESIDUE SMA N 4025
19
CC1
SOFTWARE
TRP N:29 , TYR N:102 , TYR N:103 , PHE N:278 , PHE N:327 , PHE N:333 , TYR N:359 , GLU R:82
BINDING SITE FOR RESIDUE 8PE N 4110
20
CC2
SOFTWARE
THR C:112 , ASN C:115 , PHE N:3 , ASN N:7 , TYR N:9
BINDING SITE FOR RESIDUE 9PE N 4111
21
CC3
SOFTWARE
SER L:450 , PHE N:227 , LEU N:230 , SER P:67
BINDING SITE FOR RESIDUE 6PH L 4113
22
CC4
SOFTWARE
PHE N:245 , LYS O:272 , THR O:273 , ILE O:276 , GLY P:70 , SER P:73 , THR P:77
BINDING SITE FOR RESIDUE 7PH O 4114
23
CC5
SOFTWARE
TRP L:427 , ASP L:428 , SER L:453 , MET L:454 , MET L:455 , ARG L:456 , TYR P:57 , SER P:68 , ASN T:14 , ALA T:15 , PHE T:17
BINDING SITE FOR RESIDUE UMQ L 4121
24
CC6
SOFTWARE
ASN N:27 , TYR N:28 , MET N:32 , TYR O:281 , ILE O:285 , LYS O:288 , LYS O:289 , HIS R:85 , ARG S:51
BINDING SITE FOR RESIDUE CN3 N 4131
25
CC7
SOFTWARE
ARG W:18 , CYS W:19 , GLN W:21 , CYS W:22 , HIS W:23 , GLY W:34 , ILE W:40 , SER W:45 , GLY W:46 , TYR W:51 , TYR W:53 , THR W:54 , ASN W:57 , TRP W:64 , THR W:83 , LYS W:84 , MET W:85 , ALA W:86 , PHE W:87
BINDING SITE FOR RESIDUE HEM W 4026
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_CYB_YEAST_001 (G131S, chain C/N, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CYB_YEAST_001
*
G
131
S
CYB_YEAST
---
---
C/N
G
131
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(5, 11)
Info
All PROSITE Patterns/Profiles
1: CYTB_NTER (C:1-210,N:1-210)
2: CYTC (W:6-107,D:88-241,O:88-241)
3: INSULINASE (B:37-59,M:37-59)
4: RIESKE (E:123-214,P:123-214)
5: CYTB_CTER (C:211-381,N:211-381)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTB_NTER
PS51002
Cytochrome b/b6 N-terminal region profile.
CYB_YEAST
1-210
2
C:1-210
N:1-210
2
CYTC
PS51007
Cytochrome c family profile.
CYC1_YEAST
7-108
1
W:6-107
CY1_YEAST
88-241
2
D:88-241
O:88-241
3
INSULINASE
PS00143
Insulinase family, zinc-binding region signature.
QCR2_YEAST
37-59
2
B:37-59
M:37-59
4
RIESKE
PS51296
Rieske [2Fe-2S] iron-sulfur domain profile.
UCRI_YEAST
123-214
2
E:123-214
P:123-214
5
CYTB_CTER
PS51003
Cytochrome b/b6 C-terminal region profile.
CYB_YEAST
211-381
2
C:211-381
N:211-381
[
close PROSITE info
]
Exons
(15, 29)
Info
All Exons
Exon 1.1 (C:1-139 | N:1-139)
Exon 1.2 (C:139-143 | N:139-143)
Exon 1.3 (C:144-169 | N:144-169)
Exon 1.4 (C:169-252 | N:169-252)
Exon 1.5 (C:253-269 | N:253-269)
Exon 1.6 (C:270-385 | N:270-385)
Exon 2.1 (A:27-457 | L:27-457)
Exon 3.1 (G:2-127 | R:2-127)
Exon 4.1 (E:31-215 | P:31-215)
Exon 5.1 (F:74-147 | Q:74-147)
Exon 6.2 (I:2-58 | T:2-58)
Exon 7.1 (H:2-94 | S:2-94)
Exon 8.1 (W:1-108)
Exon 9.1 (D:62-309 | O:62-309)
Exon 10.1 (B:17-368 | M:17-368)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/-
08: Boundary -/2.1
09: Boundary 2.1/-
10: Boundary -/3.1
11: Boundary 3.1/-
12: Boundary -/4.1
13: Boundary 4.1/-
14: Boundary -/5.1
15: Boundary 5.1/-
16: Boundary 6.1/6.2
17: Boundary 6.2/-
18: Boundary -/7.1
19: Boundary 7.1/-
20: Boundary -/8.1
21: Boundary 8.1/-
22: Boundary -/9.1
23: Boundary 9.1/-
24: Boundary -/10.1
25: Boundary 10.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
Q0105
1
Q0105.1
Mito:36540-36954
415
CYB_YEAST
1-139
139
2
C:1-139
N:1-139
139
139
1.2
Q0105
2
Q0105.2
Mito:37723-37736
14
CYB_YEAST
139-143
5
2
C:139-143
N:139-143
5
5
1.3
Q0105
3
Q0105.3
Mito:39141-39217
77
CYB_YEAST
144-169
26
2
C:144-169
N:144-169
26
26
1.4
Q0105
4
Q0105.4
Mito:40841-41090
250
CYB_YEAST
169-252
84
2
C:169-252
N:169-252
84
84
1.5
Q0105
5
Q0105.5
Mito:42508-42558
51
CYB_YEAST
253-269
17
2
C:253-269
N:253-269
17
17
1.6
Q0105
6
Q0105.6
Mito:43297-43647
351
CYB_YEAST
270-385
116
2
C:270-385
N:270-385
116
116
2.1
YBL045C
1
YBL045C.1
II:135519-134146
1374
QCR1_YEAST
1-457
457
2
A:27-457
L:27-457
431
431
3.1
YDR529C
1
YDR529C.1
IV:1496541-1496158
384
QCR7_YEAST
1-127
127
2
G:2-127
R:2-127
126
126
4.1
YEL024W
1
YEL024W.1
V:107260-107907
648
UCRI_YEAST
1-215
215
2
E:31-215
P:31-215
185
185
5.1
YFR033C
1
YFR033C.1
VI:224757-224314
444
QCR6_YEAST
1-147
147
2
F:74-147
Q:74-147
74
74
6.1
YGR183C
1
YGR183C.1
VII:859481-859479
3
QCR9_YEAST
1-1
1
0
-
-
6.2
YGR183C
2
YGR183C.2
VII:859265-859068
198
QCR9_YEAST
2-66
65
2
I:2-58
T:2-58
57
57
7.1
YJL166W
1
YJL166W.1
X:106428-106712
285
QCR8_YEAST
1-94
94
2
H:2-94
S:2-94
93
93
8.1
YJR048W
1
YJR048W.1
X:526327-526656
330
CYC1_YEAST
1-109
109
1
W:1-108
108
9.1
YOR065W
1
YOR065W.1
XV:447441-448370
930
CY1_YEAST
1-309
309
2
D:62-309
O:62-309
248
248
10.1
YPR191W
1
YPR191W.1
XVI:919377-920483
1107
QCR2_YEAST
1-368
368
2
B:17-368
M:17-368
352
352
[
close EXON info
]
SCOP Domains
(15, 33)
Info
All SCOP Domains
01a: SCOP_d3cx5d1 (D:62-260)
01b: SCOP_d3cx5o1 (O:62-260)
02a: SCOP_d3cx5w_ (W:)
03a: SCOP_d3cx5j_ (J:)
03b: SCOP_d3cx5u_ (U:)
04a: SCOP_d3cx5k_ (K:)
04b: SCOP_d3cx5v_ (V:)
05a: SCOP_d3cx5e1 (E:87-215)
05b: SCOP_d3cx5p1 (P:87-215)
06a: SCOP_d3cx5a1 (A:27-239)
06b: SCOP_d3cx5a2 (A:240-457)
06c: SCOP_d3cx5l1 (L:27-239)
06d: SCOP_d3cx5l2 (L:240-457)
07a: SCOP_d3cx5b1 (B:17-218)
07b: SCOP_d3cx5b2 (B:219-368)
07c: SCOP_d3cx5m1 (M:17-218)
07d: SCOP_d3cx5m2 (M:219-368)
08a: SCOP_d3cx5g_ (G:)
08b: SCOP_d3cx5r_ (R:)
09a: SCOP_d3cx5c1 (C:262-385)
09b: SCOP_d3cx5n1 (N:262-385)
10a: SCOP_d3cx5c2 (C:1-261)
10b: SCOP_d3cx5n2 (N:1-261)
11a: SCOP_d3cx5f_ (F:)
11b: SCOP_d3cx5q_ (Q:)
12a: SCOP_d3cx5d2 (D:261-309)
12b: SCOP_d3cx5o2 (O:261-309)
13a: SCOP_d3cx5e2 (E:31-86)
13b: SCOP_d3cx5p2 (P:31-86)
14a: SCOP_d3cx5i_ (I:)
14b: SCOP_d3cx5t_ (T:)
15a: SCOP_d3cx5h_ (H:)
15b: SCOP_d3cx5s_ (S:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome c
(308)
Superfamily
:
Cytochrome c
(308)
Family
:
Cytochrome bc1 domain
(36)
Protein domain
:
Cytochrome bc1 domain
(27)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
01a
d3cx5d1
D:62-260
01b
d3cx5o1
O:62-260
Family
:
monodomain cytochrome c
(197)
Protein domain
:
Mitochondrial cytochrome c
(81)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(49)
02a
d3cx5w_
W:
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
(38)
03a
d3cx5j_
J:
03b
d3cx5u_
U:
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(211)
04a
d3cx5k_
K:
04b
d3cx5v_
V:
Fold
:
ISP domain
(115)
Superfamily
:
ISP domain
(115)
Family
:
Rieske iron-sulfur protein (ISP)
(50)
Protein domain
:
ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain
(28)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
05a
d3cx5e1
E:87-215
05b
d3cx5p1
P:87-215
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LuxS/MPP-like metallohydrolase
(89)
Superfamily
:
LuxS/MPP-like metallohydrolase
(89)
Family
:
MPP-like
(65)
Protein domain
:
Cytochrome bc1 core subunit 1
(27)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
06a
d3cx5a1
A:27-239
06b
d3cx5a2
A:240-457
06c
d3cx5l1
L:27-239
06d
d3cx5l2
L:240-457
Protein domain
:
Cytochrome bc1 core subunit 2
(27)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
07a
d3cx5b1
B:17-218
07b
d3cx5b2
B:219-368
07c
d3cx5m1
M:17-218
07d
d3cx5m2
M:219-368
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Superfamily
:
14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Family
:
14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Protein domain
:
automated matches
(15)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
(2)
08a
d3cx5g_
G:
08b
d3cx5r_
R:
Fold
:
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(46)
Superfamily
:
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(46)
Family
:
automated matches
(7)
Protein domain
:
automated matches
(7)
Saccharomyces cerevisiae
(2)
09a
d3cx5c1
C:262-385
09b
d3cx5n1
N:262-385
Fold
:
Heme-binding four-helical bundle
(113)
Superfamily
:
Transmembrane di-heme cytochromes
(48)
Family
:
Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(46)
Protein domain
:
automated matches
(11)
Saccharomyces cerevisiae
(2)
10a
d3cx5c2
C:1-261
10b
d3cx5n2
N:1-261
Fold
:
Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Superfamily
:
Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Family
:
Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Protein domain
:
automated matches
(16)
Saccharomyces cerevisiae
(2)
11a
d3cx5f_
F:
11b
d3cx5q_
Q:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
(36)
Family
:
Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
(27)
Protein domain
:
Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
(27)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
12a
d3cx5d2
D:261-309
12b
d3cx5o2
O:261-309
Superfamily
:
ISP transmembrane anchor
(35)
Family
:
ISP transmembrane anchor
(32)
Protein domain
:
Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region
(27)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
13a
d3cx5e2
E:31-86
13b
d3cx5p2
P:31-86
Superfamily
:
Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Family
:
Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Protein domain
:
automated matches
(11)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
(2)
14a
d3cx5i_
I:
14b
d3cx5t_
T:
Superfamily
:
Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Family
:
Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Protein domain
:
Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(28)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
15a
d3cx5h_
H:
15b
d3cx5s_
S:
[
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CATH Domains
(11, 31)
Info
all CATH domains
01a: CATH_3cx5B01 (B:17-227)
01b: CATH_3cx5M01 (M:17-227)
01c: CATH_3cx5B02 (B:234-368)
01d: CATH_3cx5M02 (M:234-368)
01e: CATH_3cx5A01 (A:27-228)
01f: CATH_3cx5L01 (L:27-228)
01g: CATH_3cx5A02 (A:235-457)
01h: CATH_3cx5L02 (L:235-457)
02a: CATH_3cx5W00 (W:1-108)
02b: CATH_3cx5D01 (D:65-261)
02c: CATH_3cx5O01 (O:65-261)
03a: CATH_3cx5G00 (G:2-127)
03b: CATH_3cx5R00 (R:2-127)
04a: CATH_3cx5F00 (F:74-147)
04b: CATH_3cx5Q00 (Q:74-147)
05a: CATH_3cx5C00 (C:1-385)
05b: CATH_3cx5N00 (N:1-385)
06a: CATH_3cx5D02 (D:262-309)
06b: CATH_3cx5O02 (O:262-309)
07a: CATH_3cx5H00 (H:2-94)
07b: CATH_3cx5S00 (S:2-94)
08a: CATH_3cx5I00 (I:2-58)
08b: CATH_3cx5T00 (T:2-58)
09a: CATH_3cx5E01 (E:31-85)
09b: CATH_3cx5P01 (P:31-85)
10a: CATH_3cx5E02 (E:86-215)
10b: CATH_3cx5P02 (P:86-215)
11a: CATH_3cx5K00 (K:1-107)
11b: CATH_3cx5V00 (V:1-107)
11c: CATH_3cx5J00 (J:1-127)
11d: CATH_3cx5U00 (U:1-127)
View:
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(
)
(
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Cytochrome Bc1 Complex; Chain A, domain 1
(45)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain A, domain 1
(45)
Yeast (Saccharomyces cerevisiae)
(2)
01a
3cx5B01
B:17-227
01b
3cx5M01
M:17-227
01c
3cx5B02
B:234-368
01d
3cx5M02
M:234-368
01e
3cx5A01
A:27-228
01f
3cx5L01
L:27-228
01g
3cx5A02
A:235-457
01h
3cx5L02
L:235-457
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Yeast (Saccharomyces cerevisiae)
(3)
02a
3cx5W00
W:1-108
02b
3cx5D01
D:65-261
02c
3cx5O01
O:65-261
Topology
:
Cytochrome Bc1 Complex; Chain F
(39)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain F
(39)
Yeast (Saccharomyces cerevisiae)
(2)
03a
3cx5G00
G:2-127
03b
3cx5R00
R:2-127
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.20, no name defined]
(39)
Yeast (Saccharomyces cerevisiae)
(2)
04a
3cx5F00
F:74-147
04b
3cx5Q00
Q:74-147
Architecture
:
Up-down Bundle
(3216)
Topology
:
Cytochrome Bc1 Complex; Chain C
(51)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain C
(51)
Yeast (Saccharomyces cerevisiae)
(2)
05a
3cx5C00
C:1-385
05b
3cx5N00
N:1-385
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.100, no name defined]
(56)
Yeast (Saccharomyces cerevisiae)
(2)
06a
3cx5D02
D:262-309
06b
3cx5O02
O:262-309
Homologous Superfamily
:
[code=1.20.5.210, no name defined]
(39)
Yeast (Saccharomyces cerevisiae)
(2)
07a
3cx5H00
H:2-94
07b
3cx5S00
S:2-94
Homologous Superfamily
:
[code=1.20.5.260, no name defined]
(39)
Yeast (Saccharomyces cerevisiae)
(2)
08a
3cx5I00
I:2-58
08b
3cx5T00
T:2-58
Homologous Superfamily
:
[code=1.20.5.270, no name defined]
(39)
Yeast (Saccharomyces cerevisiae)
(2)
09a
3cx5E01
E:31-85
09b
3cx5P01
P:31-85
Class
:
Mainly Beta
(13760)
Architecture
:
3-layer Sandwich
(102)
Topology
:
Rieske Iron-sulfur Protein
(99)
Homologous Superfamily
:
'Rieske'-like iron-sulphur domains
(99)
Yeast (Saccharomyces cerevisiae)
(2)
10a
3cx5E02
E:86-215
10b
3cx5P02
P:86-215
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Yeast (Saccharomyces cerevisiae)
(2)
11a
3cx5K00
K:1-107
11b
3cx5V00
V:1-107
11c
3cx5J00
J:1-127
11d
3cx5U00
U:1-127
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Pfam Domains
(0, 0)
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