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3CX4
Asym. Unit
Info
Asym.Unit (96 KB)
Biol.Unit 1 (88 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E.COLI GS MUTANT E377A IN COMPLEX WITH ADP AND OLIGOSACCHARIDES
Authors
:
F. Sheng, J. H. Geiger
Date
:
23 Apr 08 (Deposition) - 28 Apr 09 (Release) - 10 Nov 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.29
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glycosyl-Transferase, Gt-B Fold, Rossmann Fold, Closed-Form, Adp And Oligosaccharide Binding, Glycogen Biosynthesis, Glycosyltransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Sheng, A. Yep, L. Feng, J. Preiss, J. H. Geiger
Oligosaccharide Binding In Escherichia Coli Glycogen Synthase.
Biochemistry V. 48 10089 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(6, 32)
Info
All Hetero Components
1a: (2R)-2-HYDROXY-3-[4-(2-HYDROXYETHY... (250a)
2a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
3a: BETA-D-GLUCOSE (BGCa)
4a: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]... (ETEa)
4b: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]... (ETEb)
4c: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]... (ETEc)
4d: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]... (ETEd)
4e: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]... (ETEe)
4f: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]... (ETEf)
4g: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]... (ETEg)
4h: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]... (ETEh)
4i: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]... (ETEi)
4j: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]... (ETEj)
4k: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]... (ETEk)
4l: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]... (ETEl)
5a: ALPHA-D-GLUCOSE (GLCa)
5b: ALPHA-D-GLUCOSE (GLCb)
5c: ALPHA-D-GLUCOSE (GLCc)
5d: ALPHA-D-GLUCOSE (GLCd)
5e: ALPHA-D-GLUCOSE (GLCe)
5f: ALPHA-D-GLUCOSE (GLCf)
5g: ALPHA-D-GLUCOSE (GLCg)
5h: ALPHA-D-GLUCOSE (GLCh)
5i: ALPHA-D-GLUCOSE (GLCi)
5j: ALPHA-D-GLUCOSE (GLCj)
5k: ALPHA-D-GLUCOSE (GLCk)
5l: ALPHA-D-GLUCOSE (GLCl)
5m: ALPHA-D-GLUCOSE (GLCm)
5n: ALPHA-D-GLUCOSE (GLCn)
5o: ALPHA-D-GLUCOSE (GLCo)
6a: SODIUM ION (NAa)
6b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
250
1
Ligand/Ion
(2R)-2-HYDROXY-3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC ACID
2
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
3
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
4
ETE
12
Ligand/Ion
2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
5
GLC
15
Ligand/Ion
ALPHA-D-GLUCOSE
6
NA
2
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(61, 61)
Info
All Sites
01: AC1 (unknown)
02: AC2 (unknown)
03: AC3 (unknown)
04: AC4 (unknown)
05: AC5 (unknown)
06: AC7 (unknown)
07: AC8 (unknown)
08: AC9 (unknown)
09: AD1 (SOFTWARE)
10: AD2 (SOFTWARE)
11: AD3 (SOFTWARE)
12: AD4 (SOFTWARE)
13: AD5 (SOFTWARE)
14: AD6 (SOFTWARE)
15: AD7 (SOFTWARE)
16: AD8 (SOFTWARE)
17: AD9 (SOFTWARE)
18: AE1 (SOFTWARE)
19: AE2 (SOFTWARE)
20: AE3 (SOFTWARE)
21: AE4 (SOFTWARE)
22: AE5 (SOFTWARE)
23: AE6 (SOFTWARE)
24: AE7 (SOFTWARE)
25: AE8 (SOFTWARE)
26: AE9 (SOFTWARE)
27: AF1 (SOFTWARE)
28: AF2 (SOFTWARE)
29: AF3 (SOFTWARE)
30: AF4 (SOFTWARE)
31: AF5 (SOFTWARE)
32: AF6 (SOFTWARE)
33: AF7 (SOFTWARE)
34: AF8 (SOFTWARE)
35: AF9 (SOFTWARE)
36: AG1 (SOFTWARE)
37: AG2 (SOFTWARE)
38: AG3 (SOFTWARE)
39: AG4 (SOFTWARE)
40: BC2 (unknown)
41: BC3 (unknown)
42: BC4 (unknown)
43: BC5 (unknown)
44: BC6 (unknown)
45: BC7 (unknown)
46: BC8 (unknown)
47: BC9 (unknown)
48: CC1 (unknown)
49: CC2 (unknown)
50: CC3 (unknown)
51: CC4 (unknown)
52: CC5 (unknown)
53: CC6 (unknown)
54: CC7 (unknown)
55: CC8 (unknown)
56: CC9 (unknown)
57: DC1 (unknown)
58: DC2 (unknown)
59: DC3 (unknown)
60: DC4 (unknown)
61: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
unknown
GLU A:9 , THR A:16 , GLY A:17 , GLY A:18 , LEU A:19 , ASP A:137 , HIS A:139 , HIS A:161 , ASN A:162
BINDING SITE FOR RESIDUE GLC A 501
02
AC2
unknown
THR A:16 , TYR A:95 , TRP A:138 , HIS A:139 , ARG A:300
BINDING SITE FOR RESIDUE GLC A 502
03
AC3
unknown
HIS A:96 , LEU A:100 , TYR A:165 , ARG A:300 , THR A:302
BINDING SITE FOR RESIDUE GLC A 503
04
AC4
unknown
MET A:168 , PHE A:169 , TYR A:170 , GLN A:194
BINDING SITE FOR RESIDUE GLC A 504
05
AC5
unknown
TYR A:103 , THR A:104 , PHE A:169 , TYR A:170 , HIS A:173
BINDING SITE FOR RESIDUE GLC A 505
06
AC7
unknown
GLN A:55 , PHE A:127 , HOH A:572
BINDING SITE FOR RESIDUE GLC A 507
07
AC8
unknown
ARG A:38 , GLN A:55 , PHE A:71 , ASP A:125 , PHE A:127
BINDING SITE FOR RESIDUE GLC A 508
08
AC9
unknown
ARG A:38 , PHE A:127
BINDING SITE FOR RESIDUE GLC A 509
09
AD1
SOFTWARE
GLU A:9 , THR A:16 , GLY A:17 , GLY A:18 , LEU A:19 , ASP A:137 , HIS A:139 , HIS A:161 , ASN A:162 , ADP A:500 , GLC A:502
BINDING SITE FOR RESIDUE GLC A 501
10
AD2
SOFTWARE
THR A:16 , TYR A:95 , TRP A:138 , HIS A:139 , ARG A:300 , GLC A:501 , GLC A:503
BINDING SITE FOR RESIDUE GLC A 502
11
AD3
SOFTWARE
HIS A:96 , LEU A:100 , TYR A:165 , ARG A:300 , THR A:302 , GLC A:502 , ETE A:527
BINDING SITE FOR RESIDUE GLC A 503
12
AD4
SOFTWARE
MET A:168 , PHE A:169 , TYR A:170 , GLN A:194 , GLC A:505
BINDING SITE FOR RESIDUE GLC A 504
13
AD5
SOFTWARE
TYR A:103 , THR A:104 , PHE A:169 , TYR A:170 , HIS A:173 , GLC A:504
BINDING SITE FOR RESIDUE GLC A 505
14
AD6
SOFTWARE
GLC A:507 , ETE A:524
BINDING SITE FOR RESIDUE GLC A 506
15
AD7
SOFTWARE
GLN A:55 , VAL A:56 , PHE A:127 , GLC A:506 , GLC A:508 , ETE A:524 , HOH A:572
BINDING SITE FOR RESIDUE GLC A 507
16
AD8
SOFTWARE
ARG A:38 , GLN A:55 , PHE A:71 , ASP A:125 , PHE A:127 , GLC A:507 , GLC A:509
BINDING SITE FOR RESIDUE GLC A 508
17
AD9
SOFTWARE
ARG A:38 , PHE A:127 , GLC A:508 , GLC A:510
BINDING SITE FOR RESIDUE GLC A 509
18
AE1
SOFTWARE
GLC A:509 , ETE A:524
BINDING SITE FOR RESIDUE GLC A 510
19
AE2
SOFTWARE
ILE A:186 , LYS A:199 , GLY A:230 , GLN A:234 , GLC A:512 , BGC A:516 , HOH A:580 , HOH A:655
BINDING SITE FOR RESIDUE GLC A 511
20
AE3
SOFTWARE
GLU A:190 , PHE A:191 , LYS A:199 , GLY A:227 , MET A:228 , GLU A:229 , GLY A:230 , LEU A:231 , GLC A:511 , GLC A:513 , HOH A:676
BINDING SITE FOR RESIDUE GLC A 512
21
AE4
SOFTWARE
ILE A:186 , GLU A:190 , PHE A:191 , ASN A:192 , GLC A:512 , GLC A:514 , HOH A:676
BINDING SITE FOR RESIDUE GLC A 513
22
AE5
SOFTWARE
ILE A:186 , GLC A:513 , GLC A:515
BINDING SITE FOR RESIDUE GLC A 514
23
AE6
SOFTWARE
HIS A:187 , GLC A:514 , BGC A:516
BINDING SITE FOR RESIDUE GLC A 515
24
AE7
SOFTWARE
HIS A:187 , GLC A:511 , GLC A:515
BINDING SITE FOR RESIDUE BGC A 516
25
AE8
SOFTWARE
ARG A:300 , ADP A:500 , HOH A:629
BINDING SITE FOR RESIDUE NA A 518
26
AE9
SOFTWARE
THR A:209 , ALA A:210 , VAL A:244 , TYR A:469
BINDING SITE FOR RESIDUE NA A 519
27
AF1
SOFTWARE
LYS A:15 , GLY A:17 , GLY A:18 , ASP A:21 , SER A:299 , ARG A:300 , LYS A:305 , LEU A:327 , GLY A:328 , GLY A:354 , TYR A:355 , HIS A:356 , LEU A:381 , THR A:382 , TYR A:385 , GLC A:501 , NA A:518 , ETE A:521 , HOH A:533 , HOH A:609 , HOH A:629 , HOH A:634
BINDING SITE FOR RESIDUE ADP A 500
28
AF2
SOFTWARE
ALA A:164 , TYR A:226 , SER A:303 , GLN A:304 , PHE A:376 , ETE A:527 , HOH A:570
BINDING SITE FOR RESIDUE 250 A 517
29
AF3
SOFTWARE
ASP A:290 , LYS A:291 , TRP A:442 , PRO A:445 , ARG A:449 , HOH A:726 , HOH A:730
BINDING SITE FOR RESIDUE ETE A 520
30
AF4
SOFTWARE
GLY A:18 , LEU A:19 , VAL A:22 , HIS A:161 , ASN A:246 , GLN A:304 , LYS A:305 , VAL A:372 , SER A:374 , ALA A:377 , PRO A:378 , CYS A:379 , GLY A:380 , ADP A:500 , HOH A:533
BINDING SITE FOR RESIDUE ETE A 521
31
AF5
SOFTWARE
ALA A:402 , ASP A:403 , VAL A:405 , SER A:406 , ASP A:407 , ASN A:412 , VAL A:422 , HOH A:720
BINDING SITE FOR RESIDUE ETE A 522
32
AF6
SOFTWARE
HIS A:86 , ASP A:89 , PHE A:450 , GLN A:454 , ALA A:457
BINDING SITE FOR RESIDUE ETE A 523
33
AF7
SOFTWARE
PHE A:127 , GLC A:506 , GLC A:507 , GLC A:510
BINDING SITE FOR RESIDUE ETE A 524
34
AF8
SOFTWARE
PHE A:127
BINDING SITE FOR RESIDUE ETE A 525
35
AF9
SOFTWARE
ALA A:164 , TYR A:165 , GLN A:166 , GLY A:167 , MET A:168 , ETE A:527 , HOH A:578 , HOH A:637
BINDING SITE FOR RESIDUE ETE A 526
36
AG1
SOFTWARE
ALA A:164 , TYR A:165 , THR A:302 , SER A:303 , GLC A:503 , 250 A:517 , ETE A:526 , HOH A:595
BINDING SITE FOR RESIDUE ETE A 527
37
AG2
SOFTWARE
PHE A:11 , LYS A:15 , ASP A:21 , ASP A:249 , ILE A:252 , TRP A:253 , GLU A:357 , HIS A:361 , HOH A:630 , HOH A:679
BINDING SITE FOR RESIDUE ETE A 528
38
AG3
SOFTWARE
LEU A:410 , ARG A:444
BINDING SITE FOR RESIDUE ETE A 529
39
AG4
SOFTWARE
ASP A:268 , ETE A:531 , HOH A:600
BINDING SITE FOR RESIDUE ETE A 530
40
BC2
unknown
ILE A:186 , LYS A:199 , GLY A:230 , GLN A:234 , HOH A:580 , HOH A:655
BINDING SITE FOR RESIDUE GLC A 511
41
BC3
unknown
GLU A:190 , PHE A:191 , LYS A:199 , GLY A:227 , MET A:228 , GLU A:229 , GLY A:230 , LEU A:231 , HOH A:676
BINDING SITE FOR RESIDUE GLC A 512
42
BC4
unknown
ILE A:186 , GLU A:190 , PHE A:191 , ASN A:192 , HOH A:676
BINDING SITE FOR RESIDUE GLC A 513
43
BC5
unknown
ILE A:186
BINDING SITE FOR RESIDUE GLC A 514
44
BC6
unknown
HIS A:187
BINDING SITE FOR RESIDUE GLC A 515
45
BC7
unknown
HIS A:187
BINDING SITE FOR RESIDUE BGC A 516
46
BC8
unknown
ARG A:300 , HOH A:629
BINDING SITE FOR RESIDUE NA A 518
47
BC9
unknown
THR A:209 , ALA A:210 , TYR A:469
BINDING SITE FOR RESIDUE NA A 519
48
CC1
unknown
LYS A:15 , GLY A:17 , GLY A:18 , ASP A:21 , SER A:299 , ARG A:300 , LYS A:305 , LEU A:327 , GLY A:328 , GLY A:354 , TYR A:355 , HIS A:356 , LEU A:381 , THR A:382 , TYR A:385 , HOH A:533 , HOH A:609 , HOH A:629 , HOH A:634
BINDING SITE FOR RESIDUE ADP A 500
49
CC2
unknown
ALA A:164 , TYR A:226 , SER A:303 , GLN A:304 , PHE A:376 , HOH A:570
BINDING SITE FOR RESIDUE 250 A 517
50
CC3
unknown
ASP A:290 , LYS A:291 , TRP A:442 , PRO A:445 , ARG A:449 , HOH A:726 , HOH A:730
BINDING SITE FOR RESIDUE ETE A 520
51
CC4
unknown
GLY A:18 , LEU A:19 , HIS A:161 , ASN A:246 , GLN A:304 , LYS A:305 , SER A:374 , ALA A:377 , PRO A:378 , CYS A:379 , GLY A:380 , HOH A:533
BINDING SITE FOR RESIDUE ETE A 521
52
CC5
unknown
ALA A:402 , ASP A:403 , SER A:406 , ASP A:407 , ASN A:412 , HOH A:720
BINDING SITE FOR RESIDUE ETE A 522
53
CC6
unknown
HIS A:86 , ASP A:89 , PHE A:450 , GLN A:454 , ALA A:457
BINDING SITE FOR RESIDUE ETE A 523
54
CC7
unknown
PHE A:127
BINDING SITE FOR RESIDUE ETE A 524
55
CC8
unknown
ALA A:164 , TYR A:165 , GLN A:166 , GLY A:167 , MET A:168 , HOH A:578 , HOH A:637
BINDING SITE FOR RESIDUE ETE A 526
56
CC9
unknown
ALA A:164 , TYR A:165 , THR A:302 , SER A:303 , HOH A:595
BINDING SITE FOR RESIDUE ETE A 527
57
DC1
unknown
PHE A:11 , LYS A:15 , ASP A:21 , ASP A:249 , ILE A:252 , TRP A:253 , GLU A:357 , HIS A:361 , HOH A:630 , HOH A:679
BINDING SITE FOR RESIDUE ETE A 528
58
DC2
unknown
LEU A:410 , ARG A:444
BINDING SITE FOR RESIDUE ETE A 529
59
DC3
unknown
ASP A:268 , HOH A:600
BINDING SITE FOR RESIDUE ETE A 530
60
DC4
unknown
ARG A:48 , ARG A:49
BINDING SITE FOR RESIDUE ETE A 531
61
DC5
SOFTWARE
ARG A:48 , ARG A:49 , ETE A:530
BINDING SITE FOR RESIDUE ETE A 531
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3cx4a_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
UDP-Glycosyltransferase/glycogen phosphorylase
(296)
Superfamily
:
UDP-Glycosyltransferase/glycogen phosphorylase
(296)
Family
:
automated matches
(20)
Protein domain
:
automated matches
(20)
Escherichia coli [TaxId: 562]
(6)
1a
d3cx4a_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3cx4A02 (A:249-458)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Glycogen Phosphorylase B;
(202)
Escherichia coli. Organism_taxid: 562.
(12)
1a
3cx4A02
A:249-458
[
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]
Pfam Domains
(0, 0)
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all PFAM domains
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