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3CVO
Biol. Unit 1
Info
Asym.Unit (153 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A METHYLTRANSFERASE-LIKE PROTEIN (SPO2022) FROM SILICIBACTER POMEROYI DSS-3 AT 1.80 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
18 Apr 08 (Deposition) - 06 May 08 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Rossmann Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Methyltransferase-Like Protein Of Unknown Function (Yp_167254. 1) From Silicibacter Pomeroyi Dss-3 At 1. 80 A Resolution
To Be Published
[
close entry info
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Hetero Components
(3, 43)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1ag: 1,2-ETHANEDIOL (EDOag)
1ah: 1,2-ETHANEDIOL (EDOah)
1ai: 1,2-ETHANEDIOL (EDOai)
1aj: 1,2-ETHANEDIOL (EDOaj)
1ak: 1,2-ETHANEDIOL (EDOak)
1al: 1,2-ETHANEDIOL (EDOal)
1am: 1,2-ETHANEDIOL (EDOam)
1an: 1,2-ETHANEDIOL (EDOan)
1ao: 1,2-ETHANEDIOL (EDOao)
1ap: 1,2-ETHANEDIOL (EDOap)
1aq: 1,2-ETHANEDIOL (EDOaq)
1ar: 1,2-ETHANEDIOL (EDOar)
1as: 1,2-ETHANEDIOL (EDOas)
1at: 1,2-ETHANEDIOL (EDOat)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: GLYCEROL (GOLa)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: TETRAETHYLENE GLYCOL (PG4a)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
25
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
-1
Ligand/Ion
GLYCEROL
3
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
4
PG4
-1
Ligand/Ion
TETRAETHYLENE GLYCOL
5
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC4 (SOFTWARE)
04: AC5 (SOFTWARE)
05: AC6 (SOFTWARE)
06: AC7 (SOFTWARE)
07: AC8 (SOFTWARE)
08: BC1 (SOFTWARE)
09: BC2 (SOFTWARE)
10: BC4 (SOFTWARE)
11: BC6 (SOFTWARE)
12: CC1 (SOFTWARE)
13: CC4 (SOFTWARE)
14: CC5 (SOFTWARE)
15: CC6 (SOFTWARE)
16: CC7 (SOFTWARE)
17: CC8 (SOFTWARE)
18: DC4 (SOFTWARE)
19: DC6 (SOFTWARE)
20: DC8 (SOFTWARE)
21: DC9 (SOFTWARE)
22: EC1 (SOFTWARE)
23: EC3 (SOFTWARE)
24: EC4 (SOFTWARE)
25: EC5 (SOFTWARE)
26: EC6 (SOFTWARE)
27: EC8 (SOFTWARE)
28: EC9 (SOFTWARE)
29: FC2 (SOFTWARE)
30: FC3 (SOFTWARE)
31: FC4 (SOFTWARE)
32: FC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:60 , ALA A:61 , ARG A:64
BINDING SITE FOR RESIDUE SO4 A 202
02
AC2
SOFTWARE
ARG B:120 , HIS B:121 , ARG B:158 , TRP B:159
BINDING SITE FOR RESIDUE SO4 B 202
03
AC4
SOFTWARE
PRO A:90 , SER A:99 , ALA A:101 , GLU D:21 , ARG D:24
BINDING SITE FOR RESIDUE EDO A 203
04
AC5
SOFTWARE
ARG B:10 , PRO B:11 , GLU B:12 , GLY B:40
BINDING SITE FOR RESIDUE EDO B 203
05
AC6
SOFTWARE
ALA A:101 , ARG A:104 , ASP B:100 , PRO D:17 , ALA D:18 , GLU D:21
BINDING SITE FOR RESIDUE EDO A 204
06
AC7
SOFTWARE
HIS B:96 , PRO B:146 , PRO B:201
BINDING SITE FOR RESIDUE EDO B 204
07
AC8
SOFTWARE
THR B:148 , PHE B:179 , GLN B:180
BINDING SITE FOR RESIDUE EDO D 203
08
BC1
SOFTWARE
ARG A:104 , ARG B:196 , THR B:199 , SER B:200
BINDING SITE FOR RESIDUE EDO B 205
09
BC2
SOFTWARE
THR A:54 , PHE A:119 , ARG A:120
BINDING SITE FOR RESIDUE EDO A 205
10
BC4
SOFTWARE
ARG A:60 , ARG A:64
BINDING SITE FOR RESIDUE EDO A 206
11
BC6
SOFTWARE
ARG A:120 , HIS A:121
BINDING SITE FOR RESIDUE EDO A 207
12
CC1
SOFTWARE
HIS B:52 , THR B:54 , ASN B:82 , GLU B:117 , GLY B:118
BINDING SITE FOR RESIDUE EDO B 206
13
CC4
SOFTWARE
ARG A:104
BINDING SITE FOR RESIDUE EDO A 208
14
CC5
SOFTWARE
ARG B:64 , LYS B:67
BINDING SITE FOR RESIDUE EDO B 207
15
CC6
SOFTWARE
ARG B:64
BINDING SITE FOR RESIDUE EDO B 208
16
CC7
SOFTWARE
ARG A:64 , LYS A:67 , TRP A:85
BINDING SITE FOR RESIDUE EDO A 209
17
CC8
SOFTWARE
TRP A:85 , THR A:86 , ASP A:87
BINDING SITE FOR RESIDUE EDO A 210
18
DC4
SOFTWARE
ARG A:196 , ARG B:115
BINDING SITE FOR RESIDUE EDO A 211
19
DC6
SOFTWARE
HIS A:52 , THR A:54 , ASN A:82 , GLY A:118
BINDING SITE FOR RESIDUE EDO A 212
20
DC8
SOFTWARE
TRP B:85 , THR B:86 , ASP B:87
BINDING SITE FOR RESIDUE EDO B 209
21
DC9
SOFTWARE
TRP B:85 , ALA B:112
BINDING SITE FOR RESIDUE EDO B 210
22
EC1
SOFTWARE
SER A:99 , ALA D:20 , GLU D:21
BINDING SITE FOR RESIDUE EDO D 213
23
EC3
SOFTWARE
HIS B:121 , ARG B:145 , ARG B:157 , TRP B:159
BINDING SITE FOR RESIDUE EDO B 211
24
EC4
SOFTWARE
ASP B:59 , GLY B:95
BINDING SITE FOR RESIDUE EDO B 212
25
EC5
SOFTWARE
ASP A:59
BINDING SITE FOR RESIDUE EDO A 213
26
EC6
SOFTWARE
THR B:54 , THR B:116 , PHE B:119 , ARG B:120
BINDING SITE FOR RESIDUE EDO B 213
27
EC8
SOFTWARE
ALA A:71 , ARG D:60 , ALA D:61 , ARG D:64
BINDING SITE FOR RESIDUE EDO D 214
28
EC9
SOFTWARE
ARG B:60 , ARG B:64
BINDING SITE FOR RESIDUE EDO B 214
29
FC2
SOFTWARE
ARG A:10 , PRO A:11 , LEU A:13 , ARG A:24 , GLY A:40
BINDING SITE FOR RESIDUE EDO A 214
30
FC3
SOFTWARE
ARG B:115 , ARG B:157 , ARG B:175
BINDING SITE FOR RESIDUE EDO B 215
31
FC4
SOFTWARE
GLU B:29 , ASP B:123 , THR B:148 , GLN B:180
BINDING SITE FOR RESIDUE PG4 D 216
32
FC5
SOFTWARE
SER B:58 , ARG B:60 , TRP B:85 , GLY B:89 , PRO B:90 , THR B:91
BINDING SITE FOR RESIDUE GOL C 209
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3cvoA00 (A:8-201)
1b: CATH_3cvoB00 (B:8-201)
1c: CATH_3cvoC00 (C:8-201)
1d: CATH_3cvoD00 (D:8-201)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Silicibacter pomeroyi dss-3. Organism_taxid: 246200. Strain: dss-3 / dsm 15171.
(1)
1a
3cvoA00
A:8-201
1b
3cvoB00
B:8-201
1c
3cvoC00
C:8-201
1d
3cvoD00
D:8-201
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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