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3CVH
Asym. Unit
Info
Asym.Unit (265 KB)
Biol.Unit 1 (134 KB)
Biol.Unit 2 (131 KB)
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(1)
Title
:
HOW TCR-LIKE ANTIBODY RECOGNIZES MHC-BOUND PEPTIDE
Authors
:
T. Mareeva, E. Martinez-Hackert, Y. Sykulev
Date
:
18 Apr 08 (Deposition) - 23 Sep 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,H,L,M,N,O,Q,R
Biol. Unit 1: A,B,C,H,L (1x)
Biol. Unit 2: M,N,O,Q,R (1x)
Keywords
:
Mhc, Tcr, Glycoprotein, Immune Response, Membrane, Mhc I, Transmembrane, Allergen, Phosphoprotein, Secreted, Immunoglobulin Domain, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
T. Mareeva, E. Martinez-Hackert, Y. Sykulev
How A T Cell Receptor-Like Antibody Recognizes Major Histocompatibility Complex-Bound Peptide
J. Biol. Chem. V. 283 29053 2008
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_B2MG_MOUSE_002 (H34Q, chain B/N, )
2: VAR_B2MG_MOUSE_003 (K44E, chain B/N, )
3: VAR_B2MG_MOUSE_004 (R81T, chain B/N, )
4: VAR_B2MG_MOUSE_005 (D85D, chain B/N, )
5: VAR_B2MG_MOUSE_006 (D85V, chain B/N, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_B2MG_MOUSE_002
*
H
54
Q
B2MG_MOUSE
---
---
B/N
H
34
Q
2
UniProt
VAR_B2MG_MOUSE_003
*
K
64
E
B2MG_MOUSE
---
---
B/N
K
44
E
3
UniProt
VAR_B2MG_MOUSE_004
*
R
101
T
B2MG_MOUSE
---
---
B/N
R
81
T
4
UniProt
VAR_B2MG_MOUSE_005
*
A
105
D
B2MG_MOUSE
---
---
B/N
D
85
D
5
UniProt
VAR_B2MG_MOUSE_006
*
A
105
V
B2MG_MOUSE
---
---
B/N
D
85
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (L:191-197,R:191-197,B:78-84,N:78-8...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_MOUSE
84-90
2
L:191-197
R:191-197
B2MG_MOUSE
98-104
2
B:78-84
N:78-84
HA1B_MOUSE
278-284
2
A:257-263
M:257-263
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Exons
(1, 2)
Info
All Exons
Exon 1.8b (C:1-8 | O:1-8)
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All Exon Boundaries
1: Boundary 1.7/1.8b
2: Boundary 1.8b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSGALT00000037195
1
ENSGALE00000242697
chr2:
68913487-68913441
47
OVAL_CHICK
-
0
0
-
-
1.2a
ENSGALT00000037195
2a
ENSGALE00000242696
chr2:
68911851-68911667
185
OVAL_CHICK
1-56
56
0
-
-
1.3
ENSGALT00000037195
3
ENSGALE00000138911
chr2:
68911415-68911365
51
OVAL_CHICK
57-73
17
0
-
-
1.4
ENSGALT00000037195
4
ENSGALE00000138907
chr2:
68910783-68910655
129
OVAL_CHICK
74-116
43
0
-
-
1.5
ENSGALT00000037195
5
ENSGALE00000138912
chr2:
68910253-68910136
118
OVAL_CHICK
117-156
40
0
-
-
1.6
ENSGALT00000037195
6
ENSGALE00000138908
chr2:
68909176-68909034
143
OVAL_CHICK
156-203
48
0
-
-
1.7
ENSGALT00000037195
7
ENSGALE00000138909
chr2:
68908697-68908542
156
OVAL_CHICK
204-255
52
0
-
-
1.8b
ENSGALT00000037195
8b
ENSGALE00000242681
chr2:
68906957-68905915
1043
OVAL_CHICK
256-386
131
2
C:1-8
O:1-8
8
8
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SCOP Domains
(6, 12)
Info
All SCOP Domains
1a: SCOP_d3cvhl1 (L:1-106)
1b: SCOP_d3cvhr1 (R:1-106)
2a: SCOP_d3cvhl2 (L:107-209)
2b: SCOP_d3cvhr2 (R:107-209)
3a: SCOP_d3cvhb_ (B:)
3b: SCOP_d3cvhn_ (N:)
4a: SCOP_d3cvha1 (A:182-274)
4b: SCOP_d3cvhm1 (M:182-274)
5a: SCOP_d3cvhh1 (H:121-219)
5b: SCOP_d3cvhq1 (Q:121-219)
6a: SCOP_d3cvha2 (A:1-181)
6b: SCOP_d3cvhm2 (M:1-181)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Mouse (Mus musculus) [TaxId: 10090]
(360)
1a
d3cvhl1
L:1-106
1b
d3cvhr1
R:1-106
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Mouse (Mus musculus) [TaxId: 10090]
(309)
2a
d3cvhl2
L:107-209
2b
d3cvhr2
R:107-209
Protein domain
:
beta2-microglobulin
(530)
Mouse (Mus musculus) [TaxId: 10090]
(166)
3a
d3cvhb_
B:
3b
d3cvhn_
N:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Mouse (Mus musculus) [TaxId: 10090]
(102)
4a
d3cvha1
A:182-274
4b
d3cvhm1
M:182-274
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
5a
d3cvhh1
H:121-219
5b
d3cvhq1
Q:121-219
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Mouse (Mus musculus), H-2KB [TaxId: 10090]
(42)
6a
d3cvha2
A:1-181
6b
d3cvhm2
M:1-181
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CATH Domains
(2, 14)
Info
all CATH domains
1a: CATH_3cvhA01 (A:1-181)
1b: CATH_3cvhM01 (M:1-181)
2a: CATH_3cvhB00 (B:1-99)
2b: CATH_3cvhL02 (L:108-209)
2c: CATH_3cvhR02 (R:108-209)
2d: CATH_3cvhL01 (L:1-107)
2e: CATH_3cvhR01 (R:1-107)
2f: CATH_3cvhA02 (A:182-272)
2g: CATH_3cvhM02 (M:182-272)
2h: CATH_3cvhH02 (H:121-219)
2i: CATH_3cvhQ02 (Q:121-219)
2j: CATH_3cvhN00 (N:1-99)
2k: CATH_3cvhH01 (H:1-120)
2l: CATH_3cvhQ01 (Q:1-120)
View:
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Classes
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Mouse (Mus musculus)
(40)
1a
3cvhA01
A:1-181
1b
3cvhM01
M:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Mouse (Mus musculus)
(152)
2a
3cvhB00
B:1-99
2b
3cvhL02
L:108-209
2c
3cvhR02
R:108-209
2d
3cvhL01
L:1-107
2e
3cvhR01
R:1-107
2f
3cvhA02
A:182-272
2g
3cvhM02
M:182-272
2h
3cvhH02
H:121-219
2i
3cvhQ02
Q:121-219
2j
3cvhN00
N:1-99
2k
3cvhH01
H:1-120
2l
3cvhQ01
Q:1-120
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Pfam Domains
(0, 0)
Info
all PFAM domains
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