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3CVD
Asym. Unit
Info
Asym.Unit (125 KB)
Biol.Unit 1 (42 KB)
Biol.Unit 2 (43 KB)
Biol.Unit 3 (40 KB)
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(1)
Title
:
REGULATION OF PROTEIN FUNCTION: CRYSTAL PACKING INTERFACES AND CONFORMATIONAL DIMERIZATION
Authors
:
P. B. Crowley, P. M. Matias, H. Mi, S. J. Firbank, M. J. Banfield, C. Dennison
Date
:
18 Apr 08 (Deposition) - 08 Jul 08 (Release) - 21 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Cupredoxin, Self Assemby, Copper, Electron Transport, Metal- Binding, Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. B. Crowley, P. M. Matias, H. Mi, S. J. Firbank, M. J. Banfield, C. Dennison
Regulation Of Protein Function: Crystal Packing Interfaces And Conformational Dimerization.
Biochemistry V. 47 6583 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: COPPER (I) ION (CU1a)
1b: COPPER (I) ION (CU1b)
1c: COPPER (I) ION (CU1c)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CU1
3
Ligand/Ion
COPPER (I) ION
2
ZN
4
Ligand/Ion
ZINC ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:38 , HIS A:39 , CYS A:89 , HIS A:92 , MET A:97
BINDING SITE FOR RESIDUE CU1 A 106
2
AC2
SOFTWARE
ASP A:44 , ASP A:45 , HOH A:225 , HOH A:226 , HIS B:61
BINDING SITE FOR RESIDUE ZN A 107
3
AC3
SOFTWARE
HIS A:24 , HOH A:275 , HIS C:24 , GLU C:104 , HOH C:226
BINDING SITE FOR RESIDUE ZN A 108
4
AC4
SOFTWARE
HIS B:39 , CYS B:89 , HIS B:92 , MET B:97
BINDING SITE FOR RESIDUE CU1 B 106
5
AC5
SOFTWARE
HIS A:61 , ASP C:44 , ASP C:45 , HOH C:181 , HOH C:182
BINDING SITE FOR RESIDUE ZN C 106
6
AC6
SOFTWARE
HIS C:39 , CYS C:89 , HIS C:92 , MET C:97
BINDING SITE FOR RESIDUE CU1 C 107
7
AC7
SOFTWARE
ASP B:44 , ASP B:45 , HOH B:214 , HIS C:61 , HOH C:180
BINDING SITE FOR RESIDUE ZN C 108
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: COPPER_BLUE (A:82-97,B:82-97,C:82-97)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_BLUE
PS00196
Type-1 copper (blue) proteins signature.
PLAS_PHOLA
116-131
3
A:82-97
B:82-97
C:82-97
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3cvda_ (A:)
1b: SCOP_d3cvdb_ (B:)
1c: SCOP_d3cvdc_ (C:)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Plastocyanin/azurin-like
(241)
Protein domain
:
Plastocyanin
(56)
Phormidium laminosum [TaxId: 32059]
(8)
1a
d3cvda_
A:
1b
d3cvdb_
B:
1c
d3cvdc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_3cvdA00 (A:1-104)
1b: CATH_3cvdB00 (B:1-104)
1c: CATH_3cvdC00 (C:1-104)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Phormidium laminosum. Organism_taxid: 32059.
(3)
1a
3cvdA00
A:1-104
1b
3cvdB00
B:1-104
1c
3cvdC00
C:1-104
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (125 KB)
Header - Asym.Unit
Biol.Unit 1 (42 KB)
Header - Biol.Unit 1
Biol.Unit 2 (43 KB)
Header - Biol.Unit 2
Biol.Unit 3 (40 KB)
Header - Biol.Unit 3
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