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Getting 'Exon' information from database.
3CUK
Asym. Unit
Info
Asym.Unit (228 KB)
Biol.Unit 1 (111 KB)
Biol.Unit 2 (113 KB)
Biol.Unit 3 (112 KB)
Biol.Unit 4 (112 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN D-AMINO ACID OXIDASE: BOUND TO AN INHIBITOR
Authors
:
S. Prasad, S. Munshi
Date
:
16 Apr 08 (Deposition) - 22 Jul 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.49
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,C (1x)
Biol. Unit 4: B,D (1x)
Keywords
:
Oxidoreductase, Alpha-Beta-Alpha Motif, Flavin Containing Proteinalpha-Beta-Alpha Motif, Flavin Containing Protein, Fad, Flavoprotein, Peroxisome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Sparey, P. Abeywickrema, S. Almond, N. Brandon, N. Byrne, A. Campbell, P. H. Hutson, M. Jacobson, B. Jones, S. Munshi, D. Pascarella, A. Pike, G. S. Prasad, N. Sachs, M. Sakatis, V. Sardana, S. Venkatraman, M. B. Young
The Discovery Of Fused Pyrrole Carboxylic Acids As Novel, Potent D-Amino Acid Oxidase (Dao) Inhibitors.
Bioorg. Med. Chem. Lett. V. 18 3386 2008
[
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 4H-FURO[3,2-B]PYRROLE-5-CARBOXYLIC... (4P5a)
1b: 4H-FURO[3,2-B]PYRROLE-5-CARBOXYLIC... (4P5b)
1c: 4H-FURO[3,2-B]PYRROLE-5-CARBOXYLIC... (4P5c)
1d: 4H-FURO[3,2-B]PYRROLE-5-CARBOXYLIC... (4P5d)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
2d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4P5
4
Ligand/Ion
4H-FURO[3,2-B]PYRROLE-5-CARBOXYLIC ACID
2
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:6 , GLY A:7 , ALA A:8 , GLY A:9 , ILE A:11 , ALA A:36 , ASP A:37 , ARG A:38 , THR A:43 , THR A:44 , THR A:45 , ALA A:48 , GLY A:50 , LEU A:51 , ARG A:162 , LYS A:163 , CYS A:181 , THR A:182 , GLY A:183 , TRP A:185 , TYR A:228 , ARG A:283 , GLY A:312 , GLY A:313 , TYR A:314 , GLY A:315 , LEU A:316 , THR A:317
BINDING SITE FOR RESIDUE FAD A 401
2
AC2
SOFTWARE
LEU A:51 , TYR A:224 , TYR A:228 , ILE A:230 , ARG A:283 , GLY A:313
BINDING SITE FOR RESIDUE 4P5 A 402
3
AC3
SOFTWARE
ALA B:8 , GLY B:9 , ILE B:11 , ALA B:36 , ASP B:37 , ARG B:38 , THR B:43 , THR B:44 , THR B:45 , ALA B:48 , GLY B:50 , LEU B:51 , ARG B:162 , CYS B:181 , THR B:182 , TRP B:185 , ILE B:202 , ARG B:283 , GLY B:312 , GLY B:313 , TYR B:314 , GLY B:315 , LEU B:316 , THR B:317
BINDING SITE FOR RESIDUE FAD B 401
4
AC4
SOFTWARE
LEU B:51 , GLN B:53 , TYR B:224 , TYR B:228 , ILE B:230 , ARG B:283 , GLY B:313
BINDING SITE FOR RESIDUE 4P5 B 402
5
AC5
SOFTWARE
ILE C:6 , GLY C:7 , ALA C:8 , GLY C:9 , ILE C:11 , ALA C:36 , ASP C:37 , ARG C:38 , THR C:43 , THR C:44 , THR C:45 , ALA C:48 , GLY C:50 , LEU C:51 , ARG C:162 , THR C:182 , TRP C:185 , LEU C:189 , ILE C:202 , HIS C:311 , GLY C:312 , GLY C:313 , TYR C:314 , GLY C:315 , LEU C:316 , THR C:317
BINDING SITE FOR RESIDUE FAD C 401
6
AC6
SOFTWARE
LEU C:51 , TYR C:224 , TYR C:228 , ILE C:230 , ARG C:283 , GLY C:313
BINDING SITE FOR RESIDUE 4P5 C 402
7
AC7
SOFTWARE
ILE D:6 , GLY D:7 , ALA D:8 , GLY D:9 , ILE D:11 , ALA D:36 , ASP D:37 , ARG D:38 , THR D:43 , THR D:44 , THR D:45 , ALA D:48 , GLY D:50 , LEU D:51 , ARG D:162 , CYS D:181 , THR D:182 , GLY D:183 , TRP D:185 , ILE D:202 , TYR D:228 , GLY D:312 , GLY D:313 , TYR D:314 , GLY D:315 , LEU D:316 , THR D:317
BINDING SITE FOR RESIDUE FAD D 401
8
AC8
SOFTWARE
LEU D:51 , TYR D:224 , TYR D:228 , ILE D:230 , ARG D:283 , GLY D:313
BINDING SITE FOR RESIDUE 4P5 D 402
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: DAO (A:305-323,B:305-323,C:305-323,D:30...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DAO
PS00677
D-amino acid oxidases signature.
OXDA_HUMAN
305-323
4
A:305-323
B:305-323
C:305-323
D:305-323
[
close PROSITE info
]
Exons
(10, 40)
Info
All Exons
Exon 1.2 (A:1-65 (gaps) | B:1-65 (gaps) | C:...)
Exon 1.3 (A:65-103 | B:65-103 | C:65-103 | D...)
Exon 1.4 (A:104-129 | B:104-129 | C:104-129 ...)
Exon 1.5 (A:129-151 | B:129-151 | C:129-151 ...)
Exon 1.6 (A:151-169 | B:151-169 | C:151-169 ...)
Exon 1.7 (A:170-204 | B:170-204 | C:170-204 ...)
Exon 1.8 (A:205-232 | B:205-232 | C:205-232 ...)
Exon 1.9 (A:232-271 | B:232-271 | C:232-271 ...)
Exon 1.10 (A:272-304 (gaps) | B:272-304 (gaps...)
Exon 1.11 (A:305-337 | B:305-337 | C:305-337 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11
11: Boundary 1.11/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000228476
1
ENSE00001232085
chr12:
109273857-109274000
144
OXDA_HUMAN
-
0
0
-
-
1.2
ENST00000228476
2
ENSE00001232101
chr12:
109278774-109278976
203
OXDA_HUMAN
1-65
65
4
A:1-65 (gaps)
B:1-65 (gaps)
C:1-65 (gaps)
D:1-65 (gaps)
65
65
65
65
1.3
ENST00000228476
3
ENSE00001232078
chr12:
109281226-109281340
115
OXDA_HUMAN
65-103
39
4
A:65-103
B:65-103
C:65-103
D:65-103
39
39
39
39
1.4
ENST00000228476
4
ENSE00001232074
chr12:
109283245-109283321
77
OXDA_HUMAN
104-129
26
4
A:104-129
B:104-129
C:104-129
D:104-129
26
26
26
26
1.5
ENST00000228476
5
ENSE00001232068
chr12:
109283984-109284049
66
OXDA_HUMAN
129-151
23
4
A:129-151
B:129-151
C:129-151
D:129-151
23
23
23
23
1.6
ENST00000228476
6
ENSE00001232066
chr12:
109286758-109286812
55
OXDA_HUMAN
151-169
19
4
A:151-169
B:151-169
C:151-169
D:151-169
19
19
19
19
1.7
ENST00000228476
7
ENSE00001232061
chr12:
109288039-109288143
105
OXDA_HUMAN
170-204
35
4
A:170-204
B:170-204
C:170-204
D:170-204
35
35
35
35
1.8
ENST00000228476
8
ENSE00000754687
chr12:
109290782-109290864
83
OXDA_HUMAN
205-232
28
4
A:205-232
B:205-232
C:205-232
D:205-232
28
28
28
28
1.9
ENST00000228476
9
ENSE00001232053
chr12:
109292455-109292572
118
OXDA_HUMAN
232-271
40
4
A:232-271
B:232-271
C:232-271
D:232-271
40
40
40
40
1.10
ENST00000228476
10
ENSE00001232046
chr12:
109293153-109293251
99
OXDA_HUMAN
272-304
33
4
A:272-304 (gaps)
B:272-304 (gaps)
C:272-304 (gaps)
D:272-304 (gaps)
33
33
33
33
1.11
ENST00000228476
11
ENSE00001232095
chr12:
109294180-109294709
530
OXDA_HUMAN
305-347
43
4
A:305-337
B:305-337
C:305-337
D:305-337
33
33
33
33
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3cukA02 (A:89-139,A:196-285)
1b: CATH_3cukB02 (B:89-139,B:196-285)
1c: CATH_3cukC02 (C:89-139,C:196-285)
1d: CATH_3cukD02 (D:89-139,D:196-285)
2a: CATH_3cukA01 (A:1-88,A:140-195,A:286-337)
2b: CATH_3cukB01 (B:1-88,B:140-195,B:286-337)
2c: CATH_3cukC01 (C:1-88,C:140-195,C:286-337)
2d: CATH_3cukD01 (D:1-88,D:140-195,D:286-337)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-Amino Acid Oxidase; Chain A, domain 2
(80)
Homologous Superfamily
:
D-Amino Acid Oxidase, subunit A, domain 2
(80)
Homo sapiens. Organism_taxid: 9606.
(1)
1a
3cukA02
A:89-139,A:196-285
1b
3cukB02
B:89-139,B:196-285
1c
3cukC02
C:89-139,C:196-285
1d
3cukD02
D:89-139,D:196-285
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Homo sapiens. Organism_taxid: 9606.
(1)
2a
3cukA01
A:1-88,A:140-195,A:286-337
2b
3cukB01
B:1-88,B:140-195,B:286-337
2c
3cukC01
C:1-88,C:140-195,C:286-337
2d
3cukD01
D:1-88,D:140-195,D:286-337
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asym.Unit (228 KB)
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