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3CSI
Biol. Unit 1
Info
Asym.Unit (165 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (81 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GLUTATHIONE TRANSFERASE PI ALLELIC VARIANT*C, I104V/A113V, IN COMPLEX WITH THE CHLORAMBUCIL-GLUTATHIONE CONJUGATE
Authors
:
L. J. Parker
Date
:
09 Apr 08 (Deposition) - 01 Jul 08 (Release) - 21 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: C,D (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Transferase, Glutathione, Detoxification, Chlorambucil, Allelic Variant
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. J. Parker, S. Ciccone, L. C. Italiano, A. Primavera, A. J. Oakley, C. J. Morton, N. C. Hancock, M. L. Bello, M. W. Parker
The Anti-Cancer Drug Chlorambucil As A Substrate For The Human Polymorphic Enzyme Glutathione Transferase P1-1: Kinetic Properties And Crystallographic Characterisation Of Allelic Variants.
J. Mol. Biol. V. 380 131 2008
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: CARBONATE ION (CO3a)
4a: GLUTATHIONE (GSHa)
4b: GLUTATHIONE (GSHb)
4c: GLUTATHIONE (GSHc)
4d: GLUTATHIONE (GSHd)
5a: L-GAMMA-GLUTAMYL-S-(2-{[4-(3-CARBO... (LZ6a)
5b: L-GAMMA-GLUTAMYL-S-(2-{[4-(3-CARBO... (LZ6b)
5c: L-GAMMA-GLUTAMYL-S-(2-{[4-(3-CARBO... (LZ6c)
5d: L-GAMMA-GLUTAMYL-S-(2-{[4-(3-CARBO... (LZ6d)
6a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
6b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
6c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
7a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
CO3
-1
Ligand/Ion
CARBONATE ION
4
GSH
2
Ligand/Ion
GLUTATHIONE
5
LZ6
2
Ligand/Ion
L-GAMMA-GLUTAMYL-S-(2-{[4-(3-CARBOXYPROPYL)PHENYL](2-CHLOROETHYL)AMINO}ETHYL)-L-CYSTEINYLGLYCINE
6
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
7
SO4
-1
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: BC3 (SOFTWARE)
2: BC4 (SOFTWARE)
3: BC5 (SOFTWARE)
4: BC6 (SOFTWARE)
5: BC7 (SOFTWARE)
6: BC8 (SOFTWARE)
7: BC9 (SOFTWARE)
8: CC1 (SOFTWARE)
9: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
BC3
SOFTWARE
ARG C:13 , HOH C:272
BINDING SITE FOR RESIDUE CL C 210
2
BC4
SOFTWARE
PHE C:8 , PRO C:9 , VAL C:10 , ARG C:13 , THR C:34 , VAL C:35 , TRP C:38 , LYS C:44 , GLN C:51 , LEU C:52 , PRO C:53 , GLN C:64 , SER C:65 , TYR C:108 , GLY C:205 , GSH C:212 , HOH C:225 , HOH C:226 , HOH C:230 , HOH C:308 , HOH C:374 , HOH C:403 , HOH C:405 , ASP D:98
BINDING SITE FOR RESIDUE LZ6 C 211
3
BC5
SOFTWARE
PHE C:8 , ARG C:13 , TRP C:38 , LYS C:44 , GLY C:50 , GLN C:51 , LEU C:52 , GLN C:64 , SER C:65 , LZ6 C:211 , HOH C:226 , HOH C:308 , HOH C:309 , HOH C:353 , HOH C:405 , ASP D:98
BINDING SITE FOR RESIDUE GSH C 212
4
BC6
SOFTWARE
GLY D:77 , GLN D:147 , HOH D:478 , HOH D:500 , HOH D:504 , HOH D:513
BINDING SITE FOR RESIDUE CA D 210
5
BC7
SOFTWARE
GLU D:30 , HOH D:569
BINDING SITE FOR RESIDUE CA D 211
6
BC8
SOFTWARE
ARG D:13 , HOH D:470
BINDING SITE FOR RESIDUE CL D 212
7
BC9
SOFTWARE
ALA D:22 , TRP D:28 , LYS D:188 , GLU D:197 , HOH D:587
BINDING SITE FOR RESIDUE MES D 213
8
CC1
SOFTWARE
ASP C:98 , PHE D:8 , VAL D:10 , ARG D:13 , TRP D:38 , LYS D:44 , GLN D:51 , LEU D:52 , PRO D:53 , GLN D:64 , SER D:65 , TYR D:108 , GLY D:205 , GSH D:215 , HOH D:454 , HOH D:463 , HOH D:464 , HOH D:489 , HOH D:495 , HOH D:510 , HOH D:537 , HOH D:579 , HOH D:581
BINDING SITE FOR RESIDUE LZ6 D 214
9
CC2
SOFTWARE
ASP C:98 , PHE D:8 , ARG D:13 , TRP D:38 , LYS D:44 , GLY D:50 , GLN D:51 , LEU D:52 , GLN D:64 , SER D:65 , LZ6 D:214 , HOH D:454 , HOH D:464 , HOH D:489 , HOH D:510 , HOH D:581
BINDING SITE FOR RESIDUE GSH D 215
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_014499 (V104V, chain C/D, )
2: VAR_014500 (V113V, chain C/D, )
3: VAR_049493 (G168D, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014499
I
105
V
GSTP1_HUMAN
Polymorphism
1695
C/D
V
104
V
2
UniProt
VAR_014500
A
114
V
GSTP1_HUMAN
Polymorphism
1138272
C/D
V
113
V
3
UniProt
VAR_049493
G
169
D
GSTP1_HUMAN
Polymorphism
41462048
C/D
G
168
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GST_NTER (C:1-80,D:1-80)
2: GST_CTER (C:82-203,D:82-203)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_NTER
PS50404
Soluble glutathione S-transferase N-terminal domain profile.
GSTP1_HUMAN
2-81
2
-
-
C:1-80
D:1-80
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTP1_HUMAN
83-204
2
-
-
C:82-203
D:82-203
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3csia1 (A:79-209)
1b: SCOP_d3csib1 (B:79-209)
1c: SCOP_d3csic1 (C:79-209)
1d: SCOP_d3csid1 (D:79-209)
2a: SCOP_d3csia2 (A:1-78)
2b: SCOP_d3csib2 (B:1-78)
2c: SCOP_d3csic2 (C:1-78)
2d: SCOP_d3csid2 (D:1-78)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Class pi GST
(65)
Human (Homo sapiens) [TaxId: 9606]
(52)
1a
d3csia1
A:79-209
1b
d3csib1
B:79-209
1c
d3csic1
C:79-209
1d
d3csid1
D:79-209
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Class pi GST
(61)
Human (Homo sapiens) [TaxId: 9606]
(49)
2a
d3csia2
A:1-78
2b
d3csib2
B:1-78
2c
d3csic2
C:1-78
2d
d3csid2
D:1-78
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3csiA01 (A:2-78,A:187-208)
1b: CATH_3csiB01 (B:2-78,B:187-208)
1c: CATH_3csiC01 (C:2-78,C:187-208)
1d: CATH_3csiD01 (D:2-78,D:187-208)
2a: CATH_3csiA02 (A:79-186)
2b: CATH_3csiB02 (B:79-186)
2c: CATH_3csiC02 (C:79-186)
2d: CATH_3csiD02 (D:79-186)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
3csiA01
A:2-78,A:187-208
1b
3csiB01
B:2-78,B:187-208
1c
3csiC01
C:2-78,C:187-208
1d
3csiD01
D:2-78,D:187-208
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Human (Homo sapiens)
(119)
2a
3csiA02
A:79-186
2b
3csiB02
B:79-186
2c
3csiC02
C:79-186
2d
3csiD02
D:79-186
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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