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3CRK
Asym. Unit
Info
Asym.Unit (160 KB)
Biol.Unit 1 (150 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PDHK2-L2 COMPLEX.
Authors
:
T. J. Green, K. M. Popov, M. Luo, A. Grigorian, A. Klyuyeva, A. Tuganova
Date
:
07 Apr 08 (Deposition) - 29 Apr 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Pyruvate Dehydrogenase Kinase Isozyme 2, Transferase, Glucose Metabolism, Kinase, Mitochondrion, Carbohydrate Metabolism, Transit Peptide, Acyltransferase, Glycolysis, Lipoyl
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Green, A. Grigorian, A. Klyuyeva, A. Tuganova, M. Luo, K. M. Popov
Structural And Functional Insights Into The Molecular Mechanisms Responsible For The Regulation Of Pyruvate Dehydrogenase Kinase 2.
J. Biol. Chem. V. 283 15789 2008
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
2a: N~6~-[(6R)-6,8-DISULFANYLOCTANOYL]... (LA2a)
2b: N~6~-[(6R)-6,8-DISULFANYLOCTANOYL]... (LA2b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
2
Ligand/Ion
POTASSIUM ION
2
LA2
2
Mod. Amino Acid
N~6~-[(6R)-6,8-DISULFANYLOCTANOYL]-L-LYSINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:24 , PHE A:26 , ASN A:63 , TYR A:374
BINDING SITE FOR RESIDUE K A 3001
2
AC2
SOFTWARE
SER B:24 , PHE B:26 , ASN B:63 , TYR B:374
BINDING SITE FOR RESIDUE K B 3002
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: BIOTINYL_LIPOYL (-|C:132-208,D:132-208)
2: LIPOYL (-|C:157-186,D:157-186)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BIOTINYL_LIPOYL
PS50968
Biotinyl/lipoyl domain profile.
ODP2_HUMAN
91-167
218-294
2
-
C:132-208
D:132-208
2
LIPOYL
PS00189
2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.
ODP2_HUMAN
116-145
243-272
2
-
C:157-186
D:157-186
[
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Exons
(3, 6)
Info
All Exons
Exon 1.4 (C:128-134 | D:132-134)
Exon 1.5a (C:135-177 | D:135-177)
Exon 1.6 (C:177-214 | D:177-209)
View:
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All Exon Boundaries
1: Boundary 1.3b/1.4
2: Boundary 1.4/1.5a
3: Boundary 1.5a/1.6
4: Boundary 1.6/1.7a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000280346
1a
ENSE00001130691
chr11:
111895538-111896475
938
ODP2_HUMAN
1-93
93
0
-
-
1.2b
ENST00000280346
2b
ENSE00000996256
chr11:
111896922-111897023
102
ODP2_HUMAN
94-127
34
0
-
-
1.3b
ENST00000280346
3b
ENSE00001105302
chr11:
111899239-111899363
125
ODP2_HUMAN
128-169
42
0
-
-
1.4
ENST00000280346
4
ENSE00001128003
chr11:
111899516-111899669
154
ODP2_HUMAN
169-220
52
2
C:128-134
D:132-134
7
3
1.5a
ENST00000280346
5a
ENSE00001127996
chr11:
111904128-111904254
127
ODP2_HUMAN
221-263
43
2
C:135-177
D:135-177
43
43
1.6
ENST00000280346
6
ENSE00001127990
chr11:
111907997-111908184
188
ODP2_HUMAN
263-325
63
2
C:177-214
D:177-209
38
33
1.7a
ENST00000280346
7a
ENSE00001127984
chr11:
111909968-111910121
154
ODP2_HUMAN
326-377
52
0
-
-
1.8
ENST00000280346
8
ENSE00001127976
chr11:
111914190-111914257
68
ODP2_HUMAN
377-399
23
0
-
-
1.9
ENST00000280346
9
ENSE00001127968
chr11:
111915862-111915954
93
ODP2_HUMAN
400-430
31
0
-
-
1.10
ENST00000280346
10
ENSE00001127959
chr11:
111916587-111916694
108
ODP2_HUMAN
431-466
36
0
-
-
1.11
ENST00000280346
11
ENSE00000996257
chr11:
111921958-111922073
116
ODP2_HUMAN
467-505
39
0
-
-
1.12a
ENST00000280346
12a
ENSE00000996239
chr11:
111930627-111930789
163
ODP2_HUMAN
505-559
55
0
-
-
1.13a
ENST00000280346
13a
ENSE00000996255
chr11:
111931762-111931898
137
ODP2_HUMAN
560-605
46
0
-
-
1.14d
ENST00000280346
14d
ENSE00001514061
chr11:
111933130-111935114
1985
ODP2_HUMAN
605-647
43
0
-
-
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3crkc_ (C:)
1b: SCOP_d3crkd_ (D:)
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Barrel-sandwich hybrid
(185)
Superfamily
:
Single hybrid motif
(49)
Family
:
Biotinyl/lipoyl-carrier proteins and domains
(40)
Protein domain
:
Lipoyl domain of dihydrolipoamide acetyltransferase
(14)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d3crkc_
C:
1b
d3crkd_
D:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3crkA02 (A:187-370)
1b: CATH_3crkB02 (B:187-370)
2a: CATH_3crkB01 (B:12-177)
2b: CATH_3crkA01 (A:12-186)
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Organisms
(
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Heat Shock Protein 90
(209)
Homologous Superfamily
:
[code=3.30.565.10, no name defined]
(205)
Norway rat (Rattus norvegicus)
(3)
1a
3crkA02
A:187-370
1b
3crkB02
B:187-370
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Butyryl-CoA Dehydrogenase, subunit A; domain 3
(76)
Homologous Superfamily
:
[code=1.20.140.20, no name defined]
(25)
Norway rat (Rattus norvegicus)
(3)
2a
3crkB01
B:12-177
2b
3crkA01
A:12-186
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Chain D
Asymmetric Unit 1
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