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3CQV
Asym. Unit
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Asym.Unit (44 KB)
Biol.Unit 1 (38 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF REVERB BETA IN COMPLEX WITH HEME
Authors
:
X. Xu, A. Dong, K. I. Pardee, J. Reinking, H. Krause, A. Schuetz, R. Zhang, H. Cui, A. Edwards, C. H. Arrowsmith, J. Weigelt, C. Bountra, A. Savchenko, A. Botchkarev, Structural Genomics Consortium (Sgc)
Date
:
03 Apr 08 (Deposition) - 05 Aug 08 (Release) - 28 Apr 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Reverb Beta, Heme, Nr1D2, Nuclear Receptor, Dna-Binding, Metal-Binding, Nucleus, Repressor, Transcription, Transcription Regulation, Zinc, Zinc-Finger, Structural Genomics, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. I. Pardee, X. Xu, J. Reinking, A. Schuetz, A. Dong, S. Liu, R. Zhang, J. Tiefenbach, G. Lajoie, A. N. Plotnikov, A. Botchkarev, H. M. Krause, A. Edwards
The Structural Basis Of Gas-Responsive Transcription By The Human Nuclear Hormone Receptor Rev-Erbbeta.
Plos Biol. V. 7 E43 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:381 , LEU A:382 , CYS A:384 , PRO A:385 , PHE A:405 , PHE A:409 , PHE A:443 , LEU A:446 , PHE A:454 , ALA A:479 , GLY A:480 , LEU A:482 , LEU A:483 , HIS A:568 , GLU A:571 , PHE A:575 , HOH A:767 , HOH A:802 , HOH A:857 , HOH A:900
BINDING SITE FOR RESIDUE HEM A 601
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_047380 (M386M, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_047380
L
386
M
NR1D2_HUMAN
Polymorphism
4858097
A
M
386
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(4, 4)
Info
All Exons
Exon 1.6b (A:381-382)
Exon 1.8b (A:383-444)
Exon 1.9b (A:445-515)
Exon 1.10c (A:515-576)
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All Exon Boundaries
1: Boundary 1.5a/1.6b
2: Boundary 1.6b/1.8b
3: Boundary 1.8b/1.9b
4: Boundary 1.9b/1.10c
5: Boundary 1.10c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000312521
1a
ENSE00001730590
chr3:
23986751-23987085
335
NR1D2_HUMAN
1-6
6
0
-
-
1.3a
ENST00000312521
3a
ENSE00001261140
chr3:
23996028-23996294
267
NR1D2_HUMAN
6-95
90
0
-
-
1.4
ENST00000312521
4
ENSE00001203459
chr3:
23997528-23997616
89
NR1D2_HUMAN
95-124
30
0
-
-
1.5a
ENST00000312521
5a
ENSE00001699264
chr3:
24001162-24001306
145
NR1D2_HUMAN
125-173
49
0
-
-
1.6b
ENST00000312521
6b
ENSE00001203450
chr3:
24003468-24004096
629
NR1D2_HUMAN
173-382
210
1
A:381-382
2
1.8b
ENST00000312521
8b
ENSE00001670863
chr3:
24006468-24006653
186
NR1D2_HUMAN
383-444
62
1
A:383-444
62
1.9b
ENST00000312521
9b
ENSE00001701951
chr3:
24009304-24009514
211
NR1D2_HUMAN
445-515
71
1
A:445-515
71
1.10c
ENST00000312521
10c
ENSE00001293494
chr3:
24018714-24021237
2524
NR1D2_HUMAN
515-579
65
1
A:515-576
62
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (44 KB)
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