PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3CQO
Asym. Unit
Info
Asym.Unit (154 KB)
Biol.Unit 1 (148 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF A F-LECTIN (FUCOLECTIN) FROM MORONE SAXATILIS (STRIPED BASS) SERUM
Authors
:
M. A. Bianchet, L. M. Amzel
Date
:
03 Apr 08 (Deposition) - 28 Apr 09 (Release) - 11 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.32
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
F-Lectin, Fucolectin, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Bianchet, E. W. Odom, G. R. Vasta, L. M. Amzel
Structure And Specificity Of A Binary Tandem Domain F-Lecti From Striped Bass (Morone Saxatilis).
J. Mol. Biol. V. 401 239 2010
[
close entry info
]
Hetero Components
(3, 15)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: ALPHA-L-FUCOSE (FUCa)
3b: ALPHA-L-FUCOSE (FUCb)
3c: ALPHA-L-FUCOSE (FUCc)
3d: ALPHA-L-FUCOSE (FUCd)
3e: ALPHA-L-FUCOSE (FUCe)
3f: ALPHA-L-FUCOSE (FUCf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
6
Ligand/Ion
CALCIUM ION
2
CL
3
Ligand/Ion
CHLORIDE ION
3
FUC
6
Ligand/Ion
ALPHA-L-FUCOSE
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:37 , HIS A:44 , ARG A:71 , ARG A:78
BINDING SITE FOR RESIDUE FUC A 1294
02
AC2
SOFTWARE
TRP A:183 , HIS A:190 , ARG A:217 , PHE A:220 , ARG A:223
BINDING SITE FOR RESIDUE FUC A 1295
03
AC3
SOFTWARE
PHE B:37 , HIS B:44 , ARG B:71 , ARG B:78
BINDING SITE FOR RESIDUE FUC B 2294
04
AC4
SOFTWARE
PHE B:166 , TRP B:183 , HIS B:190 , ARG B:217 , PHE B:220 , ARG B:223
BINDING SITE FOR RESIDUE FUC B 2295
05
AC5
SOFTWARE
PHE C:37 , HIS C:44 , ARG C:71 , ARG C:78
BINDING SITE FOR RESIDUE FUC C 3294
06
AC6
SOFTWARE
PHE C:166 , TRP C:183 , HIS C:190 , ARG C:217 , PHE C:220 , ARG C:223
BINDING SITE FOR RESIDUE FUC C 3295
07
AC7
SOFTWARE
ASN A:27 , ASP A:30 , ASN A:32 , SER A:41 , CYS A:139 , GLU A:140
BINDING SITE FOR RESIDUE CA A 4001
08
AC8
SOFTWARE
ASN B:27 , ASP B:30 , ASN B:32 , SER B:41 , CYS B:139 , GLU B:140
BINDING SITE FOR RESIDUE CA B 4002
09
AC9
SOFTWARE
ASN C:27 , ASP C:30 , ASN C:32 , SER C:41 , CYS C:139 , GLU C:140
BINDING SITE FOR RESIDUE CA C 4003
10
BC1
SOFTWARE
ASN A:173 , ASP A:176 , ASN A:178 , SER A:187 , CYS A:283 , GLU A:284
BINDING SITE FOR RESIDUE CA A 4004
11
BC2
SOFTWARE
ASN C:173 , ASP C:176 , ASN C:178 , SER C:187 , CYS C:283 , GLU C:284
BINDING SITE FOR RESIDUE CA C 4005
12
BC3
SOFTWARE
ASN B:173 , ASP B:176 , ASN B:178 , SER B:187 , CYS B:283 , GLU B:284
BINDING SITE FOR RESIDUE CA B 4006
13
BC4
SOFTWARE
ARG C:17
BINDING SITE FOR RESIDUE CL A 5001
14
BC5
SOFTWARE
LYS A:11 , LYS B:11 , LYS C:11
BINDING SITE FOR RESIDUE CL A 5002
15
BC6
SOFTWARE
LYS A:159 , LYS B:159 , LYS C:159
BINDING SITE FOR RESIDUE CL A 5003
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3cqoa1 (A:1-150)
1b: SCOP_d3cqoa2 (A:151-293)
1c: SCOP_d3cqob1 (B:1-150)
1d: SCOP_d3cqob2 (B:151-293)
1e: SCOP_d3cqoc1 (C:1-150)
1f: SCOP_d3cqoc2 (C:151-293)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
automated matches
(85)
Protein domain
:
automated matches
(85)
Morone saxatilis [TaxId: 34816]
(1)
1a
d3cqoa1
A:1-150
1b
d3cqoa2
A:151-293
1c
d3cqob1
B:1-150
1d
d3cqob2
B:151-293
1e
d3cqoc1
C:1-150
1f
d3cqoc2
C:151-293
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (154 KB)
Header - Asym.Unit
Biol.Unit 1 (148 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3CQO
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help