PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3CQG
Asym. Unit
Info
Asym.Unit (72 KB)
Biol.Unit 1 (68 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
NUCLEOPORIN NUP107/NUP133 INTERACTION COMPLEX, DELTA FINGER MUTANT
Authors
:
S. Jeudy, T. Boehmer, I. Berke, T. U. Schwartz
Date
:
02 Apr 08 (Deposition) - 01 Jul 08 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Nucleoporins, Nuclear Pore Complex, Mrna Transport, Nucleus, Phosphoprotein, Protein Transport, Translocation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Boehmer, S. Jeudy, I. C. Berke, T. U. Schwartz
Structural And Functional Studies Of Nup107/Nup133 Interaction And Its Implications For The Architecture Of Th Nuclear Pore Complex.
Mol. Cell V. 30 721 2008
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_076359 (D831A, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_076359
D
831
A
NU107_HUMAN
Disease (NPHS11)
864321632
A
D
831
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(7, 7)
Info
All Exons
Exon 1.21a (B:935-948)
Exon 1.22 (B:949-994)
Exon 1.23 (B:994-1033)
Exon 1.24c (B:1034-1060)
Exon 1.25a (B:1065-1082)
Exon 1.26 (B:1082-1105 (gaps))
Exon 1.27c (B:1119-1156 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.20/1.21a
2: Boundary 1.21a/1.22
3: Boundary 1.22/1.23
4: Boundary 1.23/1.24c
5: Boundary 1.24c/1.25a
6: Boundary 1.25a/1.26
7: Boundary 1.26/1.27c
8: Boundary 1.27c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000261396
1a
ENSE00001263815
chr1:
229644088-229643815
274
NU133_HUMAN
1-61
61
0
-
-
1.2
ENST00000261396
2
ENSE00001069992
chr1:
229641905-229641787
119
NU133_HUMAN
61-101
41
0
-
-
1.3
ENST00000261396
3
ENSE00001069983
chr1:
229637849-229637746
104
NU133_HUMAN
101-135
35
0
-
-
1.4
ENST00000261396
4
ENSE00001069988
chr1:
229636610-229636503
108
NU133_HUMAN
136-171
36
0
-
-
1.5
ENST00000261396
5
ENSE00001069985
chr1:
229635565-229635431
135
NU133_HUMAN
172-216
45
0
-
-
1.7
ENST00000261396
7
ENSE00001069978
chr1:
229634053-229633883
171
NU133_HUMAN
217-273
57
0
-
-
1.8
ENST00000261396
8
ENSE00001069994
chr1:
229631794-229631639
156
NU133_HUMAN
274-325
52
0
-
-
1.9
ENST00000261396
9
ENSE00001069984
chr1:
229631312-229631242
71
NU133_HUMAN
326-349
24
0
-
-
1.10
ENST00000261396
10
ENSE00001069987
chr1:
229625849-229625702
148
NU133_HUMAN
349-398
50
0
-
-
1.11
ENST00000261396
11
ENSE00001015850
chr1:
229623360-229623213
148
NU133_HUMAN
399-448
50
0
-
-
1.12
ENST00000261396
12
ENSE00001015859
chr1:
229622275-229622118
158
NU133_HUMAN
448-500
53
0
-
-
1.13
ENST00000261396
13
ENSE00000961359
chr1:
229619892-229619801
92
NU133_HUMAN
501-531
31
0
-
-
1.14
ENST00000261396
14
ENSE00000594035
chr1:
229613507-229613344
164
NU133_HUMAN
531-586
56
0
-
-
1.15
ENST00000261396
15
ENSE00000793031
chr1:
229611479-229611385
95
NU133_HUMAN
586-617
32
0
-
-
1.16
ENST00000261396
16
ENSE00000793030
chr1:
229606551-229606327
225
NU133_HUMAN
618-692
75
0
-
-
1.17
ENST00000261396
17
ENSE00000961360
chr1:
229602503-229602381
123
NU133_HUMAN
693-733
41
0
-
-
1.18
ENST00000261396
18
ENSE00000594038
chr1:
229601266-229601167
100
NU133_HUMAN
734-767
34
0
-
-
1.19c
ENST00000261396
19c
ENSE00001015853
chr1:
229600622-229600371
252
NU133_HUMAN
767-851
85
0
-
-
1.20
ENST00000261396
20
ENSE00000961361
chr1:
229599423-229599290
134
NU133_HUMAN
851-895
45
0
-
-
1.21a
ENST00000261396
21a
ENSE00000961362
chr1:
229596516-229596358
159
NU133_HUMAN
896-948
53
1
B:935-948
14
1.22
ENST00000261396
22
ENSE00000961363
chr1:
229594043-229593908
136
NU133_HUMAN
949-994
46
1
B:949-994
46
1.23
ENST00000261396
23
ENSE00000961364
chr1:
229588390-229588272
119
NU133_HUMAN
994-1033
40
1
B:994-1033
40
1.24c
ENST00000261396
24c
ENSE00000961365
chr1:
229586352-229586272
81
NU133_HUMAN
1034-1060
27
1
B:1034-1060
27
1.25a
ENST00000261396
25a
ENSE00000961366
chr1:
229584937-229584873
65
NU133_HUMAN
1061-1082
22
1
B:1065-1082
18
1.26
ENST00000261396
26
ENSE00000961367
chr1:
229580749-229580661
89
NU133_HUMAN
1082-1112
31
1
B:1082-1105 (gaps)
24
1.27c
ENST00000261396
27c
ENSE00001879885
chr1:
229577787-229577045
743
NU133_HUMAN
1112-1156
45
1
B:1119-1156 (gaps)
38
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (72 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3CQG
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
